Tiffany J. Callahan

@pnrobinson @realmarcin - Since there will likely be several GEO datasets we download, I'm wondering if we want to try and create (or use @pnrobinson existing scripts) a primary script...

> @pnrobinson @realmarcin - > > Since there will likely be several GEO datasets we download, I'm wondering if we want to try and create (or use @pnrobinson existing scripts)...

Just a heads up, CTD now requires a CAPTCHA challenge so attempting to download data computationally will require getting your IP address whitelisted. Luckily they are super great about it!

I'm happy to help with these data. Perhaps it is worth talking about how we want them pre-processed? Otherwise, I'm happy to use a standard script we have used in...

Sounds good. I'll take a look at the ontologizer stuff and work on this later today and tomorrow. Thanks @pnrobinson!

> > I'm happy to help with these data. Perhaps it is worth talking about how we want them pre-processed? Otherwise, I'm happy to use a standard script we have...

@justaddcoffee - two quick questions! 1. Do you want subdirectories added that match the project boards each of the data sources belong to (i.e.`transcriptomics` for this particular data), that help...

> > Do you want subdirectories added that match the project boards each of the data sources belong to (i.e.transcriptomics for this particular data), that help organize the data sources?...

> @callahantiff This just popped on my radar. Happy to help with this. Let me know how you are planning on processing this. I would love to work together on...

> is this similar to what we'd do for CORD-19, i.e. information entity (tweet) mentions entity (OBO class or gene or ...)? > > There are specific properties we might...