PheKnowLator

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### Reason for Posting @bill-baumgartner see output below (created by the [`ensmallen graph library`](https://github.com/LucaCappelletti94/ensmallen_experiments), which PheKnowLator is a part of) processed by @LucaCappelletti94. We will need to make sure that...

callahantiff

CI/CD Pipeline: Ensuring Builds Use Most Current Data

3

### TASK Currently, the build downloads are via the `builds/data_to_download.txt`, which is a list of URLs. While this will work for 90% of the existing data used, there are a...

callahantiff

### TASK - [ ] Create a page on the project wiki that includes links to the SPARQL and Neo4J endpoints as well as sample queries for the endpoints.

callahantiff

Setting Up and End-to-End CI/CD Framework

2

### Task **Task Type:** [`INFRASTRUCTURE`](https://github.com/callahantiff/PheKnowLator/projects/8#card-51635998) Determine which tools we will use in order to set-up an end-to-end CI/CD framework. #### TODO The requirements for this system include: - Leveraging GitHub...

callahantiff

#### TASK. - [ ] Create a dashboard that can be used to monitor the builds over time. Would be great if it was also interactive. **Example:** https://knowledge-graph-hub.github.io/kg-covid-19-dashboard/

callahantiff

Coding: Add Jupyter Notebook to Dockerfile

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**Enhancement**: It would be useful to add Jupyter notebook to Dockerfile to facilitate running example notebooks within a Docker container. This would also include an updated Docker usage example in...

LeRicNet

TODO: Perform OWL Reasoner Evaluation

18

**TODO:** Perform comparison of OWL reasoners. During today's meeting with @bill-baumgartner, we outlined how we will perform an evaluation of OWL reasoners on the PheKnowLator V.2.0 KG. **OWL Reasoner Selection...

callahantiff

Other: Also use persistent RDFlib store for output graphs

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Once a graph has been built, it may be useful to also import the resulting `.owl` file into an RDFlib persistent store. Use of a persistent store allows for the...

zmaas

The current builds reply on Google's Container Registry. Effective **May 15, 2024**, it will be replaced by [Artifact Registry](). According to [Google Cloud](https://cloud.google.com/container-registry/docs/release-notes): > Container Registry is being discontinued starting...

callahantiff

GitHub Actions -- Docker build-push-action failing

3

### Problem - **Associated PR/Branch:** #136 @bill-baumgartner -- hoping to see if you might see something I am missing. The Docker build-push-action part of the GitHub Actions QC run is...

callahantiff