Klijn et al. A comprehensive transcriptional portrait of human cancer cell lines. Nat Biotechnol. 2014

[jjgao]

https://www.ncbi.nlm.nih.gov/pubmed/25485619

• [ ] create a issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• [ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• [ ] Document the curation process, e.g. how and by whom the data was transformed
• [ ] Follow the data checklist
• [ ] Create a pull request to datahub once the data is curated
• [ ] Push to triage portal
• [ ] Import into msk and public portal database
• [ ] Update cBioPortal news

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[rmadupuri]

Cohort Stats: 675 human cancer cell lines - most of the cell lines overlap with ccle_broad_2019

Data Availability: Clinical - Table S1 Fusion - Table S8 Drug Response (Crizotinib) IC50 values - Table S11 Gene expression - Supp data1,2 MAF - Supp data3 CNA - Supp data4

Status: Study can be curated.

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[zeynepkaragoz]

I will be working on transforming this data set.