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New study for Cutaneous Neurofibroma Model (Gabsang Lee Lab)

Open anngvu opened this issue 2 years ago • 0 comments

Please keep this checklist for curation of a new study.

  • [x] create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
  • [ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link Paper in preparation
  • [x] Document the curation process, e.g. how and by whom the data was transformed The The Neurofibromatosis Therapeutic Acceleration Program org funded NF-OSI team at Sage to process the data and submit to the public cBioPortal for a selection of their funded studies. Processing pipelines are described here: NPD-Nextflow Data Processing & Configuration-161122-155435.pdf.
  • [ ] Follow the data checklist
  • [ ] Create a pull request to datahub once the data is curated
  • [ ] Push to triage portal
  • [ ] Import into msk and public portal database
  • [ ] Update the default quick select study list see https://github.com/cBioPortal/cbioportal/issues/5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
  • [ ] Update cBioPortal news

anngvu avatar Dec 15 '23 15:12 anngvu