Gounder et al. Clinical genomic profiling in the management of patients with soft tissue and bone sarcoma. Nature 2022

[rmadupuri]

Paper: https://www.nature.com/articles/s41467-022-30496-0

Please keep this checklist for curation of a new study.

• [ ] create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• [ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• [ ] Document the curation process, e.g. how and by whom the data was transformed
• [ ] Follow the data checklist
• [ ] Create a pull request to datahub once the data is curated
• [ ] Push to triage portal
• [ ] Import into msk and public portal database
• [ ] Update the default quick select study list see https://github.com/cBioPortal/cbioportal/issues/5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
• [ ] Update cBioPortal news

[Rima-Waleed]

Study illustrates the genomic landscape in 7,494 patients spanning 44 distinct sarcoma subtypes.

Genomic analysis:

• Targeted sequencing
• RNA-sequencing

Data availability:

• Clinical data Supplementary dataset 1 (sheet 2: samples_table_final_for_supplem)
• Mutation data Supplementary dataset 1 (sheet 1: variants_table_final_for_supple)

• Reached out to author to request data files (SV, RNA-seq, CNA, and clinical sample data)- waiting on response.

[sbabyanusha]

This paper has been curated. Here is the link:https://www.cbioportal.org/study/summary?id=sarcoma_msk_2022