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Published 20 hours ago • verified publisher icon cBioPortal

genomic coordinate issue

Open jjgao opened this issue 1 year ago • 5 comments

reported by a user

In this patient, the genomic coordinates seem incorrect.

image

jjgao avatar Jul 25 '23 13:07 jjgao

The same user spotted more issues.

The end position of SNPs of lusc_cptac_2021 were all assigned wrongly.

https://www.cbioportal.org/patient?sampleId=C3N-01020&studyId=lusc_cptac_2021

image

jjgao avatar Jul 25 '23 20:07 jjgao

It would be great if these can be added to validator.

jjgao avatar Jul 25 '23 20:07 jjgao

This is fixed.

sbabyanusha avatar Jul 27 '23 17:07 sbabyanusha

Thanks, @sbabyanusha . The user identified more cases in other studies: https://groups.google.com/g/cbioportal/c/WQcWgsHz1e4/m/w4Bq2LygDQAJ.

jjgao avatar Aug 01 '23 18:08 jjgao

@jjgao Will work on fixing them soon.

sbabyanusha avatar Aug 01 '23 18:08 sbabyanusha