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ihch_dkfz_2019:New public study

Open sbabyanusha opened this issue 2 years ago • 0 comments

Cancer studies updated in this pull request:

  • ihch_dkfz_2019.

checks

For all pull requests:

  • [ ] Passes validation

For a new study (in addition to above):

  • [ ] Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
  • [ ] is study meta data complete? e.g. pmid, group of PUBLIC
  • [ ] were all samples profiled with WES/WGS? If not, is gene panel file curated?
  • [ ] are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
  • [ ] clinical sample and patient data with meta files
  • [ ] mutations data with meta files
  • [ ] MAF is based on hg19
  • [ ] MAF with 2 isoforms: uniprot and mskcc
  • [ ] CNA data with meta files
  • [ ] CNA segment data with meta files
  • [ ] Expression data including z-scores with meta files
  • [ ] Case-lists for all profiles.
  • [ ] Manual checking (Niki or JJ): Triage or private Portal link here

sbabyanusha avatar Sep 06 '22 17:09 sbabyanusha