Labrecque et al. Molecular profiling stratifies diverse phenotypes of treatment-refractory metastatic castration-resistant prostate cancer

[SRodenburg]

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6763249/

Study with 98 PDX tumors, includes clinical data, RNA-Seq.

• [x] create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• [ ] List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• [ ] Document the curation process, e.g. how and by whom the data was transformed
• [ ] Follow the data checklist
• [ ] Create a pull request to datahub once the data is curated
• [ ] Push to triage portal
• [ ] Import into msk and public portal database
• [ ] Update the default quick select study list see https://github.com/cBioPortal/cbioportal/issues/5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
• [ ] Update cBioPortal news

[egarcialara]

Data Available:

• RNA-seq for 98 CRPC metastasis samples (hg38) - GEO at GSE126078 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126078)

Data Missing:

• Clinical/survival data

[egarcialara]

Minimal clinical data available under Characterstics for each sample in GEO (GSE126078).

[sbabyanusha]

This issue is being closed as we couldn't get a response from the author.