cgdsr

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On pages 15, 17, 18, 20, 21, there are some truncated code snippets. [cgdsr.pdf](https://cran.r-project.org/web/packages/cgdsr/vignettes/cgdsr.pdf) I believe this is the source file from which the documentation is generated: [cgdsr.Rnw](https://github.com/cBioPortal/cgdsr/blob/master/vignettes/cgdsr.Rnw)

n1zea144

Error running the test and getProfileData functions following the vignette

12

Hello, I get the following error with the test function: ``` > test(mycgds) getCancerStudies... OK getCaseLists (1/2) ... OK getCaseLists (2/2) ... OK getGeneticProfiles (1/2) ... OK getGeneticProfiles (2/2) ......

asmagen

Hi, I am trying to obtain MS data from CPTAC (available for BRCA, OV and COADREAD) and am encountering an error when running the following code for study_id="coadread_tcga", while "brca_tcga"...

bontus

Hello, I'm trying to run the following code, as an example out of the manuals, with only one change of the cancer study to be row 4 meaning 'laml_tcga_pan_can_atlas_2018'. The...

asmagen

Hi cBioPortal maintainers, I get an error using the `CGDS` function in `cgdsr`. ``` cgds

LiNk-NY

I have used the following code to download mutations for the COADREAD complete non-hypermutables. `mycgds

gaiusjaugustus