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Remove track doesn't work on first try when coming from homepage

Open inodb opened this issue 9 months ago • 4 comments

When coming from homepage and clicking on Ras/RAF in CRC the remove track button does not work on first try

inodb avatar May 07 '24 15:05 inodb

How to reproduce:

It doesn't remove the track on the first try. After the first try the feature works as expected.

onursumer avatar May 07 '24 18:05 onursumer

Looks like when we have an QOL query it is not possible to remove the gene with the OQL at all.

To reproduce

  • Go to https://deploy-preview-4907--cbioportalfrontend.netlify.app/results/oncoprint?cancer_study_list=coadread_tcga_pub&cancer_study_id=coadread_tcga_pub&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_pub_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_pub_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=coadread_tcga_pub_nonhypermut&gene_list=KRAS%2520NRAS%2520BRAF%253AV600E&gene_set_choice=user-defined-list&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cgistic&geneset_list=%20&tab_index=tab_visualize&Action=Submit
  • Try removing BRAF image

It is not possible to remove BRAF on second try either.

onursumer avatar May 08 '24 17:05 onursumer

Small update.

gene_list parameter in the example query (which is not working): gene_list=KRAS%20NRAS%20BRAF (KRAS NRAS BRAF) after the removal try, gene_list is changed to the following: gene_list=%250A%2520KRAS%2520NRAS%2520BRAF And then removing is working, you can check it by opening the original URI with modified gene_list

Unfortunately, I wasn't able to reproduce the issue described in the previous message (removing is working on the first time)

I'm new here, and I have no expertise in the medical area, but are there any other symptoms that something is wrong with the querying? It looks like a badly hardcoded URI with the example.

*when I'm querying the same data from the main screen, I receive such URL (removing working fine) https://www.cbioportal.org/results/oncoprint?cancer_study_list=coadread_tcga_pub&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cgistic&case_set_id=coadread_tcga_pub_cna_seq&gene_list=KRAS%2520NRAS%2520BRAF&geneset_list=%20&tab_index=tab_visualize&Action=Submit

antonpoplyovka avatar Oct 18 '24 13:10 antonpoplyovka

TP53 and MDM2/4 alterations in GBM example is not working as well Screenshot 2024-10-18 at 15 22 09

antonpoplyovka avatar Oct 18 '24 13:10 antonpoplyovka