cbioportal icon indicating copy to clipboard operation
cbioportal copied to clipboard

Error in cbioportal-container when spinning up backend instance

Open gblaih opened this issue 11 months ago • 1 comments

Getting this error in docker cbioportal-container logs when spinning up backend instance for localdb e2e testing. Other machines don't appear to be getting this issue; may be only affecting intel chip machines?

ERROR 150 --- [nio-8080-exec-5] o.a.c.c.C.[.[.[/].[dispatcherServlet] : Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Handler dispatch failed: java.lang.NoSuchMethodError: org.bson.json.JsonWriterSettings: method 'void <init>()' not found] with root cause java.lang.NoSuchMethodError: org.bson.json.JsonWriterSettings: method 'void <init>()' not found

gblaih avatar Mar 11 '24 17:03 gblaih

Also running into this error after updating our instance to v6. Any idea about the cause?

ERROR 74 --- [nio-8080-exec-5] o.a.c.c.C.[.[.[/].[dispatcherServlet]    : Servlet.service() for servlet [dispatcherServlet] in context with path [] threw exception [Handler dispatch failed: java.lang.NoSuchMethodError: org.bson.json.JsonWriterSettings: method 'void <init>()' not found] with root cause

java.lang.NoSuchMethodError: org.bson.json.JsonWriterSettings: method 'void <init>()' not found
	at com.mongodb.BasicDBObject.toJson(BasicDBObject.java:154) ~[mongo-java-driver-3.12.14.jar:na]
	at com.mongodb.BasicDBObject.toString(BasicDBObject.java:238) ~[mongo-java-driver-3.12.14.jar:na]
	at org.cbioportal.web.SessionServiceController.getUserStudies(SessionServiceController.java:238) ~[cbioportal-webapp/:na]
	at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103) ~[na:na]
	at java.base/java.lang.reflect.Method.invoke(Method.java:580) ~[na:na]
...

Edit: Maybe similar to #8898 & #8970?

sellth avatar Apr 16 '24 14:04 sellth

@sellth Can you try and see if the issue is resolved on your end as well (after the PR)

haynescd avatar May 08 '24 20:05 haynescd

@haynescd This solved it, thanks!

sellth avatar May 15 '24 13:05 sellth