Ben Weisburd

Until this is merged into the official repo, I've merged it into my fork @ https://github.com/bw2/SpliceAI so it can be used @ https://spliceailookup.broadinstitute.org/

this isn't well documented, but I'm pretty sure TRF .dat files have 1-based start coords.

and I'm just basing this on the dat files being off-by-one in IGV. I never did find docs for this.

What I ended up using was ``` def tree_envelops_interval(t, i): return any(ti.contains_interval(i) for ti in interval_tree.overlap(i)) ```

I ran into similar errors with `rule_filter.py` (in my case it was `ImportError: Missing required dependencies ['pandas']`) For me, it turned out the order of the installation steps mattered. The...