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entropy.empirical with default fixed bin size?

Open cbio-astar opened this issue 3 years ago • 0 comments

Can you check for entropy whether we are using entropy.empirical with default fixed bin size? The bin size should not be fixed across all dataset, it has to follow Doan’s rule: http://msmbuilder.org/mdentropy/0.3.0/generated/mdentropy.core.binning.doanes_rule.html#mdentropy.core.binning.doanes_rule

The formula can be found in methods (Entropy analysis): https://www.nature.com/articles/srep07137

cbio-astar avatar Oct 17 '21 15:10 cbio-astar