Update deps in pre-commit config and fix formatting

[mgunyho]

I was making a commit for another PR but the pre-commit hook had an error, which seems to be a problem with isort version 5.10.1 and poetry, see here: https://stackoverflow.com/questions/75281731/pre-commit-fails-to-install-isort-5-10-1-with-error-runtimeerror-the-poetry-co. This PR fixes that.

[btel]

could you fix linting errors? thanks!

[mgunyho]

Oh, I didn't realize that updating black introduced new linting errors, but fixed it now! Also updated the black version to match in .github/workflows/black.yml

[mgunyho]

This PR also closes #123