bshifaw
bshifaw
Added a script that generates a TSV with a list of docker images used in our wdl files. The TSV contains ``` DOCKER_NAME LATEST_TAG USED_TAG FILE_LINE WDL_PATH biocontainers/samtools v1.9-4-deb_cv1 1.3.1...
Requirements for each workflow - Adding description in meta - Adding Ref map file location to description (indicate this is for inter-organizational use: private) - Adding input description in parameter_meta...
Background: The recent introduction of the 'libmamba' solver, as discussed in this [Anaconda blog post](https://www.anaconda.com/blog/a-faster-conda-for-a-growing-community), has brought significant performance improvements to Conda's dependency resolution. Adapting our Dockerfiles to incorporate this...
Adding git actions to initiate WDL tests on our testing infrastructure 1. action initiated for every push on a feature branch 2. action initiated on the `main` branch weekly Tests...
Some docker images are stored in either quay or docker hub, these should be migrated to google artifact register for consistency. Example : quay.io/broad-long-read-pipelines/lr-pacasus
The current LRConvertBCF workflow, is used to convert a BCF file into a compressed VCF file, and is intended as a temporary solution to handle transient issues. It needs to...
Refracted Log command such that code is broken into smaller functions Added option to download logs Added Azure components such that files from azure storage containers can be read or...
Description: When running cromshell, the following error occurs: "TypeError: Descriptors cannot not be created directly. If this call came from a _pb2.py file, your generated code is out of date...