Joe Brown
Joe Brown
If you're not using normal library prep with a standard index read, then you ought to be prepared to write the informatics tool to deal with the consequences of those...
That's not good! It's adding what has been determined to be the barcode. You're still using `-B barcode_file_plate1.txt`, right? I would also probably add `-b`. Is this a public dataset...
`-x` is definitely what you want, though you will want to clean up that awful header at some point. Most aligners will strip at the first whitespace anyways. You will...
I agree that adding this option could be done, but disagree that space delimited metadata in the header is somehow non-standard. It's quite standard and any tool that can't deal...
You've been invited as a collaborator to this repo and may merge pull reqs. Feel free to request a review if you're uncomfortable, but I encourage you to feel free...
if you make a pull req updating `host` and `run` on https://github.com/bioconda/bioconda-recipes/blob/master/recipes/bcl2fastq-nextseq/meta.yaml, i'd be happy to review it.
No, this would be a weekend/off-hours project and those are pretty booked these days.
I'll happily to review pull requests!
I don't believe anyone ever prodded into this further.
The lack of merging such basic functionality like Python 3 support would lead me to believe these codes are already dead. And this pull request was made almost a year...