long-read-pipelines
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Adding Script to Generate a Summary of Docker Images Used by Workflows
Added a script that generates a TSV with a list of docker images used in our wdl files. The TSV contains
DOCKER_NAME LATEST_TAG USED_TAG FILE_LINE WDL_PATH
biocontainers/samtools v1.9-4-deb_cv1 1.3.1 180 /wdl/deprecated/tasks/dsde_pipelines_tasks/variantcalling.wdl
broadinstitute/gatk gatkbase-3.1.0 4.2.6.1 217 /wdl/tasks/Transcriptomics/MASSeq.wdl
us.gcr.io/broad-dsp-lrma/lr-10x 0.1.18 0.1.18 139 /wdl/tasks/Transcriptomics/MASSeq.wdl
us.gcr.io/broad-dsp-lrma/lr-transcript_utils 0.0.15 0.0.14 276 /wdl/tasks/Transcriptomics/MASSeq.wdl
us.gcr.io/broad-dsp-lrma/lr-transcript_utils 0.0.15 0.0.14 335 /wdl/tasks/Transcriptomics/MASSeq.wdl
us.gcr.io/broad-dsp-lrma/lr-transcript_utils 0.0.15 0.0.14 45 /wdl/tasks/Transcriptomics/MASSeq.wdl
broadinstitute/picard latest 2.23.7 1484 /wdl/tasks/Utility/Utils.wdl
gcr.io/cloud-marketplace/google/ubuntu2004 latest latest 1307 /wdl/tasks/Utility/Utils.wdl
gcr.io/cloud-marketplace/google/ubuntu2004 latest latest 2261 /wdl/tasks/Utility/Utils.wdl
gcr.io/cloud-marketplace/google/ubuntu2004 latest latest 2337 /wdl/tasks/Utility/Utils.wdl
quay.io/broad-long-read-pipelines/lr-pacasus 0.3.0 0.3.0 1151 /wdl/tasks/Utility/Utils.wdl
ubuntu None 19.10 2609 /wdl/tasks/Utility/Utils.wdl
ubuntu None hirsute-20210825 638 /wdl/tasks/Utility/Utils.wdl
us.gcr.io/broad-dsp-lrma/lr-align 0.1.28 0.1.26 701 /wdl/tasks/Utility/Utils.wdl
us.gcr.io/broad-dsp-lrma/lr-align 0.1.28 0.1.28 1087 /wdl/tasks/Utility/Utils.wdl
us.gcr.io/broad-dsp-lrma/lr-basic 0.1.2 0.1.1 1367 /wdl/tasks/Utility/Utils.wdl
us.gcr.io/broad-dsp-lrma/lr-basic 0.1.2 0.1.1 1421 /wdl/tasks/Utility/Utils.wdl