long-read-pipelines
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Replace LRConvertBCF workflow with a more efficient and up-to-date solution
The current LRConvertBCF workflow, is used to convert a BCF file into a compressed VCF file, and is intended as a temporary solution to handle transient issues. It needs to be replaced with a more efficient and up-to-date solution.
Once the replacement workflow is created, the LRConvertBCF workflow should be removed, and the associated documentation and tests should be updated.
Originally posted by @SHuang-Broad in https://github.com/broadinstitute/long-read-pipelines/pull/392#discussion_r1158976924