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PON - unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’

Open EvoMedLab opened this issue 2 years ago • 2 comments

I am trying to create a panel of normals from 8 samples, but execution halts. I have checked the input wig files and they appear correct:

Attaching package: ‘S4Vectors’ The following objects are masked from ‘package:data.table’: first, second The following objects are masked from ‘package:base’: expand.grid, I, unname Loading required package: IRanges Attaching package: ‘IRanges’ The following object is masked from ‘package:data.table’: shift

Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’ Calls: loadReadCountsFromWig ... seqlevelsStyle<- -> seqlevelsStyle<- -> seqinfo -> <Anonymous> Execution halted

EvoMedLab avatar May 25 '22 01:05 EvoMedLab

I confirmed that I receive this error, even when comparing a tumor-normal pair

Correcting Tumour Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘seqinfo’ for signature ‘"data.table"’ Calls: loadReadCountsFromWig ... seqlevelsStyle<- -> seqlevelsStyle<- -> seqinfo -> <Anonymous>

EvoMedLab avatar May 27 '22 01:05 EvoMedLab

Check the version you are using. Pls. make sure u are using the script of the cloned version from the github.

Kange2014 avatar Aug 03 '22 02:08 Kange2014