gnomad_methods

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Document constants in constants.py

1

And maybe move them to a more appropriate module than the catch-all "constants".

nawatts

Remove init scripts?

3

Now that this can be used on a Dataproc cluster using `hailctl dataproc start cluster --packages gnomad`, are `gnomad-init.sh` and `master-init.sh` still necessary?

nawatts

lfrancioli

Logging strategy

1

At the moment, we use a single logger and not much thought was put into a good logging strategy for our messages throughout the library. Reviewing and developing a more...

lfrancioli

Hail only allows `add_liftover` to be run once per reference genome. We'd like to add a liftover check using `has_liftover` and also standardize the chain files used during reference genome...

mike-w-wilson

jkgoodrich

averywpx

averywpx

UnboundLocalError: local variable 'error_rate' referenced before assignment

1

Hello Developers, I am following the short tutorial from [here](https://gnomad.broadinstitute.org/news/2021-09-using-the-gnomad-ancestry-principal-components-analysis-loadings-and-random-forest-classifier-on-your-dataset/) for ancestry classification. It was working fine when I had earlier versions of the gnomad and hail. I did a...

PoisonAlien

Add generic constraint functions called in building model part of the constraint pipeline.

averywpx