gnomad_methods
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filter_vep_transcript_csqs does not work for passing list of CSQ terms
There is a bug here: https://github.com/broadinstitute/gnomad_methods/blob/019865838f993841a540e0b29d8d2f3b1333b1b8/gnomad/utils/vep.py#L788
The most_severe_consequence
field is a top level vep
field, at the same level as transcript_consequences
, so the way this is currently built does not work as the function looks for most_severe_consequence
inside of transcript_consequences
here. All other vep fields that get worked on in this function are within transcript_consequences
so they work.