gnomad-browser
gnomad-browser copied to clipboard
Variant display pages claims to just be showing Exome data but is showing Exome plus Genome data
What you did:
I looked at the GnomAD 4.1 data for variant chr2:79195912-G-T
https://gnomad.broadinstitute.org/variant/2-79195912-G-T?dataset=gnomad_r4
What happened:
The foot of the Genetic Ancestry Group Frequencies table indicate that just exome data was being viewed
However the total allele count from the Genetic Ancestry Group Frequencies table matches the allele count for the Exomes PLUS Genomes. Comparing the AN values with running a test sample through hail and the published GnomAD 4.1 data the allele counts do match the counts for just exomes.