gatk
gatk copied to clipboard
Mutect2 output VCF fails validation
Hi
After running vcf-validator (https://github.com/EBIvariation/vcf-validator) for mutect2 vcf (gatk 4.6.1.0), warnings appear for INFO/AS_SB_TABLE, for example:
Line 243: INFO AS_SB_TABLE does not match the meta specification Number=1 (expected 1 value(s)). AS_SB_TABLE=0,38|0,9.
Would it possible to fix the INFO field for the 'Number' and/or 'Type' ? :
##INFO=<ID=AS_SB_TABLE,Number=1,Type=String,Description="Allele-specific forward/reverse read counts for strand bias tests. Includes the reference and alleles separated by |.">
Many thanks, Jordi