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0 or 1 based coordinates.

Open vappiah opened this issue 1 year ago • 1 comments

Dear Developers, I recently used UCSC hg38 as a reference for gatk mutect2 variant calling. I plan to annotate the variants using VEP but from this thread, VEP supports 1-based system. My question is that, is the vcf generated by mutect2 0-based or 1-based.

Thanks

vappiah avatar Oct 31 '24 22:10 vappiah