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Published 20 hours ago • verified publisher icon broadinstitute

Strange output by Funcotator

Open gevro opened this issue 6 months ago • 2 comments

Hi, With gatk 4.6.0 and Funcotator data sources v1.8, and output in VCF format, I'm seeing some annotations with strange character combinations inside of them: "%7C" "%20"

For example for one varaint chr11:54942730 C>T (hg38), for gnomAD_genome_AF, I'm seeing: 8.55286e-05_%7C_3.46021e-04

But this should simply be one number.

Seems like a bug in the parsing of the retrieval of gnomAD info from the google cloud bucket by Funcotator.

gevro avatar Aug 27 '24 19:08 gevro