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Rc vs 1365 hatcher testing parquet

Open RoriCremer opened this issue 9 months ago • 0 comments

TODO: Builder method Still want to fully test the compressed location method (do we? do we care about this for Azure?!??!) Still want to fully test the header creation

to run this locally: java -jar ../build/libs/gatk.jar
CreateVariantIngestFiles
-V HG00405.haplotypeCalls.er.raw.vcf.gz.rb.g.vcf.gz
-L wgs_calling_regions.hg38.noCentromeres.noTelomeres.interval_list
-IG FORTY
--force-loading-from-non-allele-specific false
--ignore-above-gq-threshold false
--project-id gvs-internal
--dataset-name hatcher_import_test
--enable-reference-ranges true
--enable-vet true
--enable-vcf-headers true
--output-type PARQUET
-SN SM-N58BO
-SNM sample_map.csv
--ref-version 38
--skip-loading-vqsr-fields false

RoriCremer avatar May 23 '24 20:05 RoriCremer