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Reverting the CombineGVCFs and GenotypeGVCFs to the old behavior for no-calls when there are no PLs present.

Open jamesemery opened this issue 6 months ago • 2 comments

Initial check-in to find test failures.

Adresses #8328

jamesemery avatar Feb 13 '24 19:02 jamesemery

Github actions tests reported job failures from actions build 7891988613 Failures in the following jobs:

Test Type JDK Job ID Logs
integration 17.0.6+10 7891988613.11 logs
integration 17.0.6+10 7891988613.0 logs

gatk-bot avatar Feb 13 '24 20:02 gatk-bot

Github actions tests reported job failures from actions build 7905273867 Failures in the following jobs:

Test Type JDK Job ID Logs
integration 17.0.6+10 7905273867.11 logs
integration 17.0.6+10 7905273867.0 logs

gatk-bot avatar Feb 14 '24 18:02 gatk-bot

A different series of PRs was already merged to return us to the old GenotypeGVCFs no-call behavior. This PR is obsolete.

droazen avatar Jun 29 '24 21:06 droazen