gatk
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Reverting the CombineGVCFs and GenotypeGVCFs to the old behavior for no-calls when there are no PLs present.
Initial check-in to find test failures.
Adresses #8328
Github actions tests reported job failures from actions build 7891988613 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
---|---|---|---|
integration | 17.0.6+10 | 7891988613.11 | logs |
integration | 17.0.6+10 | 7891988613.0 | logs |
Github actions tests reported job failures from actions build 7905273867 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
---|---|---|---|
integration | 17.0.6+10 | 7905273867.11 | logs |
integration | 17.0.6+10 | 7905273867.0 | logs |
A different series of PRs was already merged to return us to the old GenotypeGVCFs no-call behavior. This PR is obsolete.