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Published 20 hours ago • verified publisher icon broadinstitute

Error in VariantFiltration: SnpCluster

Open Avinash-git-py opened this issue 2 years ago • 0 comments

Hi, I need to include the SnpCluster filter in VariantFiltration but the filtration is not working for me. I have included the other filters but I'm not sure about the usage of this particular filter.

The command that I have used: --genotype-filter-name "SnpCluster"
--genotype-filter-expression "clusterSize=3" \

The error that I'm facing: 12:52:33.595 WARN JexlEngine - ![0,15]: 'clusterSize = 3;' context is readonly

image

Avinash-git-py avatar Aug 28 '23 09:08 Avinash-git-py