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Published 20 hours ago • verified publisher icon broadinstitute

Problem with gcnvkernel installation

Open snakesch opened this issue 3 years ago • 0 comments

Hi,

I am on GATK v4.3.0.0 (CentOS) and would like to implement GermlineCNVCaller in my work. In an attempt to set up the conda environment (gcnvkernel) from zip using the command conda env create -f gatkcondaenv.yml, I got an error like this: Found conflicts! Looking for incompatible packages.

I also tried installing with tar, but I couldn't find gatkPythonPackageArchive.zip as required in the yml.

Any help on this issue is much appreciated!

Java version: 1.8.0_201

snakesch avatar Nov 14 '22 05:11 snakesch