Upgrade htsjdk to v3.0.0.

[lbergelson]

This upgrades htsjdk to v3.0.0 which was attempted in #7867 and then reverted in #7960 in order to unblock the jukebox merge.

[gatk-bot]

Github actions tests reported job failures from actions build 3084888525 Failures in the following jobs:

Test Type	JDK	Job ID	Logs
unit	11	3084888525.13	logs
unit	8	3084888525.1	logs
variantcalling	8	3084888525.2	logs

[codecov[bot]]

Codecov Report

Merging #8025 (bdcb3c5) into master (19778c1) will decrease coverage by 0.001%. The diff coverage is 87.500%.

Additional details and impacted files

@@               Coverage Diff               @@
##              master     #8025       +/-   ##
===============================================
- Coverage     86.643%   86.642%   -0.001%     
+ Complexity     38929     38927        -2     
===============================================
  Files           2334      2334               
  Lines         182616    182612        -4     
  Branches       20049     20048        -1     
===============================================
- Hits          158224    158219        -5     
+ Misses         17357     17356        -1     
- Partials        7035      7037        +2     

Impacted Files	Coverage Δ
...bender/tools/funcotator/StrandCorrectedAllele.java	0.000% <ø> (ø)
...hellbender/utils/haplotype/FlowBasedHaplotype.java	94.737% <ø> (ø)
...nstitute/hellbender/utils/haplotype/Haplotype.java	89.899% <ø> (ø)
...kers/haplotypecaller/AssemblyBasedCallerUtils.java	90.000% <66.667%> (-0.041%)	:arrow_down:
...itute/hellbender/engine/spark/GATKRegistrator.java	100.000% <100.000%> (ø)
...ools/walkers/haplotypecaller/AlleleAndContext.java	82.353% <100.000%> (+5.882%)	:arrow_up:
.../walkers/haplotypecaller/graphs/InverseAllele.java	59.091% <100.000%> (-3.409%)	:arrow_down:
...lbender/tools/sv/cluster/CanonicalSVCollapser.java	87.471% <0.000%> (-0.464%)	:arrow_down:
...itute/hellbender/tools/LocalAssemblerUnitTest.java	92.448% <0.000%> (ø)

[gatk-bot]

Github actions tests reported job failures from actions build 3085525827 Failures in the following jobs:

Test Type	JDK	Job ID	Logs
variantcalling	8	3085525827.2	logs

[gatk-bot]

Github actions tests reported job failures from actions build 3229835669 Failures in the following jobs:

Test Type	JDK	Job ID	Logs
variantcalling	8	3229835669.2	logs