gatk
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Implement SVConcordance tool
Analogous to GenotypeConcordance, but for SVs.
Codecov Report
Merging #7977 (27cf6ef) into master (d1a4f94) will decrease coverage by
0.006%
. The diff coverage is92.234%
.
Additional details and impacted files
@@ Coverage Diff @@
## master #7977 +/- ##
===============================================
- Coverage 86.658% 86.652% -0.006%
- Complexity 39024 39154 +130
===============================================
Files 2337 2346 +9
Lines 182961 183608 +647
Branches 20079 20147 +68
===============================================
+ Hits 158550 159100 +550
- Misses 17365 17447 +82
- Partials 7046 7061 +15
Impacted Files | Coverage Δ | |
---|---|---|
...roadinstitute/hellbender/tools/sv/SVLocatable.java | 25.000% <ø> (ø) |
|
...titute/hellbender/utils/GenotypeUtilsUnitTest.java | 94.624% <ø> (ø) |
|
...ellbender/tools/sv/cluster/CanonicalSVLinkage.java | 83.146% <62.963%> (-6.043%) |
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...ender/utils/variant/GATKSVVariantContextUtils.java | 93.939% <66.667%> (-2.835%) |
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...stitute/hellbender/tools/sv/SVCallRecordUtils.java | 79.167% <73.810%> (-4.518%) |
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...der/tools/walkers/sv/SVClusterIntegrationTest.java | 98.974% <77.778%> (-0.522%) |
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...oadinstitute/hellbender/tools/sv/SVCallRecord.java | 84.348% <79.167%> (+2.144%) |
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...r/tools/sv/concordance/SVConcordanceAnnotator.java | 83.465% <83.465%> (ø) |
|
...roadinstitute/hellbender/tools/sv/SVTestUtils.java | 90.274% <84.286%> (-6.426%) |
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...lbender/tools/sv/cluster/CanonicalSVCollapser.java | 80.635% <86.508%> (-6.836%) |
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... and 30 more |