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Implement SVConcordance tool

Open mwalker174 opened this issue 1 year ago • 1 comments

Analogous to GenotypeConcordance, but for SVs.

mwalker174 avatar Aug 05 '22 20:08 mwalker174

Codecov Report

Merging #7977 (27cf6ef) into master (d1a4f94) will decrease coverage by 0.006%. The diff coverage is 92.234%.

Additional details and impacted files
@@               Coverage Diff               @@
##              master     #7977       +/-   ##
===============================================
- Coverage     86.658%   86.652%   -0.006%     
- Complexity     39024     39154      +130     
===============================================
  Files           2337      2346        +9     
  Lines         182961    183608      +647     
  Branches       20079     20147       +68     
===============================================
+ Hits          158550    159100      +550     
- Misses         17365     17447       +82     
- Partials        7046      7061       +15     
Impacted Files Coverage Δ
...roadinstitute/hellbender/tools/sv/SVLocatable.java 25.000% <ø> (ø)
...titute/hellbender/utils/GenotypeUtilsUnitTest.java 94.624% <ø> (ø)
...ellbender/tools/sv/cluster/CanonicalSVLinkage.java 83.146% <62.963%> (-6.043%) :arrow_down:
...ender/utils/variant/GATKSVVariantContextUtils.java 93.939% <66.667%> (-2.835%) :arrow_down:
...stitute/hellbender/tools/sv/SVCallRecordUtils.java 79.167% <73.810%> (-4.518%) :arrow_down:
...der/tools/walkers/sv/SVClusterIntegrationTest.java 98.974% <77.778%> (-0.522%) :arrow_down:
...oadinstitute/hellbender/tools/sv/SVCallRecord.java 84.348% <79.167%> (+2.144%) :arrow_up:
...r/tools/sv/concordance/SVConcordanceAnnotator.java 83.465% <83.465%> (ø)
...roadinstitute/hellbender/tools/sv/SVTestUtils.java 90.274% <84.286%> (-6.426%) :arrow_down:
...lbender/tools/sv/cluster/CanonicalSVCollapser.java 80.635% <86.508%> (-6.836%) :arrow_down:
... and 30 more

codecov[bot] avatar Aug 05 '22 22:08 codecov[bot]