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Added a slightly more helpful error message to the reads filter
Fixes #7944
Github actions tests reported job failures from actions build 2679127706 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
---|---|---|---|
unit | 11 | 2679127706.13 | logs |
unit | 8 | 2679127706.1 | logs |
Codecov Report
Merging #7947 (413983a) into master (e81a361) will decrease coverage by
40.864%
. The diff coverage is100.000%
.
:exclamation: Current head 413983a differs from pull request most recent head 7791882. Consider uploading reports for the commit 7791882 to get more accurate results
@@ Coverage Diff @@
## master #7947 +/- ##
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- Coverage 86.981% 46.116% -40.864%
+ Complexity 36962 24011 -12951
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Files 2221 2217 -4
Lines 173894 173851 -43
Branches 18785 18792 +7
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- Hits 151254 80174 -71080
- Misses 15998 87790 +71792
+ Partials 6642 5887 -755
Impacted Files | Coverage Δ | |
---|---|---|
.../hellbender/engine/filters/CountingReadFilter.java | 60.215% <100.000%> (-39.785%) |
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...broadinstitute/hellbender/utils/svd/SimpleSVD.java | 0.000% <0.000%> (-100.000%) |
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...titute/hellbender/utils/UnvalidatingGenomeLoc.java | 0.000% <0.000%> (-100.000%) |
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...itute/hellbender/utils/locusiterator/LIBSTest.java | 0.000% <0.000%> (-100.000%) |
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...ute/hellbender/tools/htsgetreader/HtsgetClass.java | 0.000% <0.000%> (-100.000%) |
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...te/hellbender/tools/htsgetreader/HtsgetFormat.java | 0.000% <0.000%> (-100.000%) |
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...ender/utils/svd/ApacheSingularValueDecomposer.java | 0.000% <0.000%> (-100.000%) |
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...ender/utils/svd/OjAlgoSingularValueDecomposer.java | 0.000% <0.000%> (-100.000%) |
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...nder/utils/downsampling/FractionalDownsampler.java | 0.000% <0.000%> (-100.000%) |
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...der/cmdline/programgroups/ExampleProgramGroup.java | 0.000% <0.000%> (-100.000%) |
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... and 1144 more |
@droazen I fixed the tests. Can you take a look? I know you have opinions