gatk
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VS-227 clean up temp tables
Previously, a temporary table is created as part of extract of the VQSR features, and it goes into a separate temp_tables
dataset in the current project -- that is no longer true, and it now goes into the default dataset as a short living temp table with the task name and a hash
This pr should:
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default to the current dataset (with the VET etc tables) rather than a different dataset
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give a prefix to the temp tables so we know which one came from which step
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temp table TTL---not a changeable option, but default to 24 hours across the board
Still to discuss: Parameterization of the location (dataset) to create the temp table in (default to the default dataset) manual clean up/TTL is a changeable option and TTL is parametrizable (currently the TTL is a parameter for the prepare step -- but then we set a default as 24 hrs in the WDL)
Github actions tests reported job failures from actions build 2315930821 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
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cloud | 8 | 2315930821.10 | logs |
cloud | 11 | 2315930821.11 | logs |
cloud | 11 | 2315930821.11 | logs |
cloud | 8 | 2315930821.10 | logs |
Codecov Report
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@@ Coverage Diff @@
## ah_var_store #7742 +/- ##
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Coverage ? 86.282%
Complexity ? 35195
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Files ? 2170
Lines ? 164904
Branches ? 17787
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Hits ? 142283
Misses ? 16296
Partials ? 6325
Github actions tests reported job failures from actions build 2320536513 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
---|---|---|---|
cloud | 8 | 2320536513.10 | logs |
cloud | 11 | 2320536513.11 | logs |
Github actions tests reported job failures from actions build 2347228211 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
---|---|---|---|
cloud | 8 | 2347228211.10 | logs |
cloud | 11 | 2347228211.11 | logs |
Github actions tests reported job failures from actions build 2347214817 Failures in the following jobs:
Test Type | JDK | Job ID | Logs |
---|---|---|---|
cloud | 11 | 2347214817.11 | logs |