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Published 20 hours ago • verified publisher icon broadinstitute

CPX_TYPE for CTX

Open epiercehoffman opened this issue 2 months ago • 0 comments

The CPX_TYPE for CTX records should be CTX_PP/QQ or CTX_PQ/QP. This is expected by downstream tools like ManualReview.wdl and SVAnnotate. In a recent callset, it was observed that the CPX_TYPE for CTX records was CTX. We need to investigate where this annotation is getting dropped.

epiercehoffman avatar Apr 04 '24 21:04 epiercehoffman