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Published 20 hours ago • verified publisher icon broadinstitute

Use END2 for svtk vcf2bed --split-bnd

Open mwalker174 opened this issue 1 year ago • 0 comments

The --split-bnd option causes BND records to be broken into two records: one for the start and one for the end. svtk vcf2bed currently uses the END position but should first check if END2 has been assigned and, if so, use that instead.

Changes should be needed here for BND and here for CTX.

Affected workflows include GenerateBatchMetrics and GenotypeBatch.

mwalker174 avatar Jun 20 '23 16:06 mwalker174