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Published 20 hours ago • verified publisher icon broadinstitute

All sv are filtered out at TrainPEGenotyping step.

Open giacuong171 opened this issue 1 year ago • 2 comments

Hi, I'm trying to replicate the gatk-sv workflow with snakemake and encountered a problem at the TrainPEGenotyping step. At the step of generating the $batch.pe.train.include.txt in PE_genotype.sh script, all variants have been filtered out. Could someone help me ?

giacuong171 avatar Sep 27 '22 08:09 giacuong171