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Published 20 hours ago • verified publisher icon broadinstitute

Wham emits DEL/DUP calls with SVLEN=0

Open mwalker174 opened this issue 4 years ago • 0 comments

These appear to be misclassified insertions, and at least some of them are called as INS by manta. Evaluations need to be done on some different solutions:

  1. Upgrading wham (currently 1.7.0)
  2. Converting these calls to INS
  3. Filtering these calls

In addition, these sites are not clustered properly in Module 01.

mwalker174 avatar Jul 01 '20 16:07 mwalker174