cromshell Difference in installation between brew and conda

Difference in installation between brew and conda

Open dalessioluca opened this issue 3 years ago • 4 comments

brew install broadinstitute/dsp/cromshell --> does not install womtool conda install cromshell -c bioconda --> does install womtool

Is that the desired behavior?

Apr 08 '21 14:04 dalessioluca

@jonn-smith @lbergelson are any of those two (brew and conda) maintained? if not, 2.0 should have that fixed IMO.

Apr 27 '21 17:04 SHuang-Broad

I think we only maintain the brew releases. @lbergelson - is that right?

We should probably maintain both...

I have no objection to making the packages install womtool as a dependency.

Apr 27 '21 18:04 jonn-smith

#39 is probably the one that brought in conda. Should we own the maintenance? (I support that as long as the original author agrees)

Apr 27 '21 18:04 SHuang-Broad

womtool is an optional brew dependency to keep the install size small. You can do brew install cromshell --with-cromwell to get it.

It's easy to make it required but it takes it from a 10kb install to 100megs or something because womtool is packaged with cromwell.

Apr 27 '21 19:04 lbergelson