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Published 20 hours ago • verified publisher icon broadinstitute

LoadData CSV File Missing

Open jenna-tomkinson opened this issue 2 years ago • 1 comments

Hello!

I will be rerunning the Cell Health dataset that was run with CellProfiler 3.0 (I assume) using the latest CellProfiler 4.2.4 version for a project to assess any differences.

As I am trying to use the LoadData module, I noticed it was struggling with being able to select metadata for grouping. I attempted to use both .csv files located in the 0.download_data/IDR folder, but neither of them worked.

I figured out this was due to the files not containing columns with metadata (e.g. Metadata_Plate, etc.).

Do you happen to have the exact .csv file that you used to run Cell Health with CellProfiler 3.0? If you did, that would greatly help my ability to reproduce the results with the newer version.

Thank you!

jenna-tomkinson avatar Dec 16 '22 21:12 jenna-tomkinson