Running time for Tangram

[annaminyifeng]

Hello, thank you for creating Tangram!

I am using Tangram to deconvolute my Slide-seq data and was wondering how long the training step typically takes. My two datasets contains 2928 genes and it has been running for three and a half days.

Our logs have outputted this message since the first day and nothing has updated since. Any insight would be greatly appreciated!

INFO:root:2928 training genes are saved in uns``training_genes of both single cell and spatial Anndatas. INFO:root:11948 overlapped genes are saved in uns``overlap_genes of both single cell and spatial Anndatas. INFO:root:uniform based density prior is calculated and saved in obs``uniform_density of the spatial Anndata. INFO:root:rna count based density prior is calculated and saved in obs``rna_count_based_density of the spatial Anndata. INFO:root:Allocate tensors for mapping. INFO:root:Begin training with 2928 genes and uniform density_prior in constrained mode...