BridgeDb

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Data models of: - input to conversion tools that create Derby files - the SQL data model(s) of the Derby files - the IRI link sets

egonw

create VoID headers files default when saving and finalizing a Derby database

1

See https://github.com/bridgedb/data/issues/22

egonw

Bug with AbstractResolversTest.java class: maven running the test on mvn clean install, should be skipping since it is testing an abstract class (test fails when running mvn clean install)

hbasaric

[INFO] Running org.bridgedb.rdf.identifiers.org.IdentifersOrgReaderTest init Looking for log4j.properties Unable to find /home/deniseslenter/git/BridgeDb/org.bridgedb.rdf/log4j.properties in local Directory No environment variable BRIDGEDB_CONFIG found No enviroment variable CATALINA_HOME found No directory found at: conf/BridgeDb at...

DeniseSl22

Create bundle

3

cschneider

Use identifiers.org shortcodes for chembl

3

System code `Cl` changes to `chembl.compound` - meaning it's then obvious how to also add `chembl.target` to `datasources.txt` in `org.bridgedb.bio`. This change means the system codes match the identifiers.org -...

stain

write Software Management Plan

3

See "ELIXIR Software Management Plan for Life Sciences": https://biohackrxiv.org/k8znb/

egonw

Gene mapping database issues

5

Several things on the gene mapping database: - [x] 1. Last version is from Sept. 2016, so a new version should be created (regularly). - [x] 2. On the website...

DeniseSl22

@egonw : the readme of this repo is very long, so I think it needs to be updated. I believe the section on "OpenPhacts" could be removed/added to an "outdated"...

DeniseSl22

Disease BridgeDb

1

Dear BridgeDb people, do you think about a Disease BridgeDb? There are several databases and ontologies with disease IDs and ontology terms that cries for integration into the BridgeDb world....

fehrhart