MixSIAR
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error in output_JAGS(jags.1, mix, source, output_options)
output_options <- list(summary_save = TRUE,
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summary_name = "summary_statistics",
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sup_post = FALSE,
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plot_post_save_pdf = TRUE,
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plot_post_name = "posterior_density",
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sup_pairs = FALSE,
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plot_pairs_save_pdf = TRUE,
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plot_pairs_name = "pairs_plot",
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sup_xy = TRUE,
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plot_xy_save_pdf = FALSE,
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plot_xy_name = "xy_plot",
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gelman = TRUE,
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heidel = FALSE,
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geweke = TRUE,
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diag_save = TRUE,
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diag_name = "diagnostics",
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indiv_effect = FALSE,
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plot_post_save_png = FALSE,
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plot_pairs_save_png = FALSE,
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plot_xy_save_png = FALSE,
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diag_save_ggmcmc = FALSE)
output_JAGS(jags.1, mix, source, output_options) Error in UseMethod("depth") : no applicable method for 'depth' applied to an object of class "NULL" In addition: Warning messages: 1: In par(usr) : argument 1 does not name a graphical parameter 2: In par(usr) : argument 1 does not name a graphical parameter 3: In par(usr) : argument 1 does not name a graphical parameter 4: In par(usr) : argument 1 does not name a graphical parameter 5: In par(usr) : argument 1 does not name a graphical parameter 6: In par(usr) : argument 1 does not name a graphical parameter 7: The dot-dot notation (
..scaled..
) was deprecated in ggplot2 3.4.0. ℹ Please useafter_stat(scaled)
instead. ℹ The deprecated feature was likely used in the MixSIAR package. Please report the issue at https://github.com/brianstock/MixSIAR/issues. This warning is displayed once every 8 hours. Calllifecycle::last_lifecycle_warnings()
to see where this warning was generated.
I also got this error. I'm not sure how to proceed.
output_JAGS(jags.1, mix, source) Error in UseMethod("depth") : no applicable method for 'depth' applied to an object of class "NULL" In addition: Warning messages: 1: In par(usr) : argument 1 does not name a graphical parameter 2: In par(usr) : argument 1 does not name a graphical parameter 3: In par(usr) : argument 1 does not name a graphical parameter 4: The dot-dot notation (
..scaled..
) was deprecated in ggplot2 3.4.0. ℹ Please useafter_stat(scaled)
instead. ℹ The deprecated feature was likely used in the MixSIAR package. Please report the issue at https://github.com/brianstock/MixSIAR/issues. This warning is displayed once every 8 hours. Calllifecycle::last_lifecycle_warnings()
to see where this warning was generated.