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Published 20 hours ago • verified publisher icon brianhie

Error with colab notebook for nucleoprotein

Open Jiacheng06 opened this issue 1 year ago • 2 comments

There was a strange KeyError "J" showing up when I ran the notebook, please see the fig attached. Thanks! error

Jiacheng06 avatar Sep 20 '23 16:09 Jiacheng06

The notebook uses an old version of the esm package (fair-esm==0.4.0) that supports parsing non-amino acid characters. If you want to fix the error (and reproduce the paper results), you can just revert to that version of esm. Ideally, I should also make the package robust to these kinds of inputs.

brianhie avatar Sep 20 '23 22:09 brianhie

Thanks a lot! I see.

Jiacheng06 avatar Sep 21 '23 15:09 Jiacheng06