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ERROR: Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file
I am use partifinder2 to cauculate the best partition scheme using amino acid dataset, the err shows Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file, but i cant find the problems in my dateset.
AP018696 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYNAILIQGKNQAGQDISVTCEVQQLLGDHCIRAVAMNATDGLMRGMEAFDTGNPLTVPVGPTTLGRIFNVVGQPVDGLEDASHENSLPIHRSAPAFVDLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIQEDNISESKVALVYGQMNEPPGARMRVALTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYTCAQNVKETLQRYKELQDIIAILGLDELSEEDRQVVARARKIERFLSQPFFVAEVFTGSPGKYVSLKETIQGFNKILSGDLDDLPEQAFYLVGNLEEVVAKAANL-MSLQVCIMTPDKIFWDEEAEEIILPTNTGQMGVLPKHAPLITALDIGVMSIRQDNSWNSFALMNGFASIQNDKVTILVNSAESKQTIDKNEAEKEFLEAQERVNKTIDEKEKVEAVLAFKRSRARFLVIKD----FGHGFGINTNILETNVINLAVVIAVVVTFVGDAVRELLENRKKKILQNICAADARAQEIQEKMDQAISQLESAKIRANEIREQGLIAAEREKNLCIEQAEEETARLKETRQSAIRLQQQKAIQQISQQIVLLSLKQVRDQLKLKMKSTFHPWVNKVKINKYTSIKKMNPLIAAASVIAAGLSVGLAAVGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPFAS-NLLFDSAEVSVGQHYYWEIGSYSIHGQVLMVSWFVFAIIATISFLANNQLKPIPEGLQNLTEFFTEFIRDLAKTQIGEEDYEKWVPFLGTIFLFIFVSNWSGALIPWHVIEIPNGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFKRYISPAAFLLPINVLEDFTKPLSLSFRLFGNILADELVVAVLVALVPLIVPIPIMLLGLFTSGIQALVFATLAGAYIGEAVEDHH---EPVGIIPRSIIRTLNRFLTQLFQNSNNLVIEEFRISRYQILVSLQSLLSLIFIPLIINFLAKTFILIPLTDYLWNKQQDDIFLNSYLEKEALTELQDFEEVLYFDYFLTPTVILKSQIQKKTLDLANNYNQKSIEALTNFFGDLITFGTLTLVIIVLKPQIIIFKSFLVEFIYSLSDTLKSALLILSTNLLVGFHSPRGWELFLEFFLNRFGFPPNENFIFLFVATFPVLLDTIFKYWIFRYLNKISPSTVATYHAMIEMSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASINYLMTEVNFGWLIRSIHRWSASMMVLSMILHVCRVYLTGGFKRPRELTWVTGVTMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGTTLVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMAVIKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVTIFGTFACVIGLAVLDPAAIGEPANPFATPLEILPEWYFYPTFQLLRTVPNKLLGVLLMAAVPAGLITVPFIENINKFQNPFRRPVATTVFLIGTVAAIWLGIGATLPIDISLTLGLFMVEPLLSGIVLGLVPVTISGLLVAAYLQYRRGDSLNFMLTLISYIGLLIGGLIMASIFYLAVVK-IQLIMTISPPEREAKKVKIVVDRDPVETSFEKWAKPGHFSRSLAKGPTTTTWIWNLHADVHDFDAHTSDLEDISRKIFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITTELQLYSTAIGGLVMAAAMFFAGWFHYHKSAPKLEWFQNVESMLNHHLAGLLGLGSLGWAGHQIHVSLPVNKLLDAGVDPQEIPLPHELLLNPSLMAQLYPSFKQGLTPFFTLNWSEYSDFLTFQGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHSGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYATQLSLFTHHNWIGGFCIVGAGAHAAIFMVRDYNPTNNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTLSALGRPADMFSDTAIQLQPIFAQWIQKTHFLAPNATAPNALAGTSPSWGGDVVAVGGKVAMMPISLGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKSNLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGTVNASGISHITGGNFAQSANTINGWLRDFLWAQSAQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIISVGMATTKFPKFSQGLANDPTTRRIWFGIATAHDFESHDGMTEENLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQNPLNIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIATSGVYQWWYTIGMRTNQDLYIGSIFLSLAATAFLFAGWLHLQPKFQPGLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAARGERVGWDNFLTTLPHPQGLTPFFTGNWAAYAENPDTGNHIFGTASGSGTAILTFLGGFHPQTQSLWLSDMAHHHLAIAVLFIVAGHMYRTNFGIGHSMRQILEAHTPPAGGLGAGHKGLYDTVNNSLHFQLGLALASVGTICSLVAQHMYSLPPYAFLAQDFTTQASLYTHHQYIAGFILCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQASHGKTAYGFDLLLSQPNSAAYSAGQSLWLPGWLEAINSNTNTLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYFHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPIAALIRWKDKPVALSIVQARLVGLAHFSAGYVLTYAAFLIASTSSKFGMSHSVKIYETCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGSETTRSMGLSYMKNFLTYLSTAPVIAFAWISFTAGLLIEVNRFFPDPLVFSFMTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGVCAYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSIVDSQGRVLNSWADIINRANLGMEVMHERNAHNFPLDLAMGLPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGVTQSWGGWTITGESASNPGIWSYEGVAASHIVLSGLLFFAAIWHWVMWDLELFRDPRSGKPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGSVQPVAPSWGPDGFDPYNPGGVASHHIAAGILGILAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVAGTMWYGSATTPIELYGPTRYQWDLGFFQQEIDKRVQNSLSEGKSLSQAWAQIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHAVFKDKDGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRAESKYSIEQVGVSVTFYGGELDGVSFTNPATVKKYARRAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGARTIFRDVFAGIDEGIDDQIEFGAFLKLGDTSSRRQSV------------------------------------------------------MNLFEVAHFIPEKPMYEQGLILLPHLATLGYGVGPGGEVVDTFPYFVSGVLHLISSAVLGFGGIYHSLIGPETLEESFPFFAYVWKDKNKMSTILGIHLIILGIGAWLLVWKAMYFGGVYDTWAVGGGDVRVITNPTINPGIIFGYLLKSPFGGDGWIVSVDNMEDIIGGHIWIGTLEIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLAAISLMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFVLGFFFFVAHLWHAGRARAAAAGFEKGIDRDNEPALSMKPLDMTITIGKSEEKRGLFDVMDDWLRRDRFVYVGWSGLLLLPCAYFALGGWLTGITFVTSWYSHGLASSFLEGCNFLTAAVSTPPNSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARAVKIRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNQLLNEGIRAWMAAQDQPHETLVFPEEVLPRGNALMAGTTGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNSLEQVKQLSTMSSKKS-TYTYPIFTVRWLSVHALAVPTVFFLGAITAMQFIQR---AAQKDTEN---GMSTALGTLLRPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVILDDVTMSWQTLAKMLTLKIFVYTVVSFFVSLFIFGFLSNDPGRNPSS---MSNTGTTGRIPLWLVGVVVGIAAIGLLAIFFYGSYSGLGSSL---MTFLLAKLPEAYAPFDPIVDVLPIIPVFFLLLAFVWQASVSFRMNKPNPNKQTVELNRTSLYWGLLLIFVLAVLFSSYIFNMEVNVLGLIAVALFILIPTSFLLILYVKTASADEMESPAFFFSIFIGCLLLSITGYSLYVGFGPPSKTLRDPFEEHEDMEALVYTFLLVGTLGIIFFSIFFREPPRIIKMTFIFQLTLFAFVSLSFILVVGVPVIFASPNGWTENKRVVFSGVGIWVLLVFALGVLNSFVIMAPQTETKAGTGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPL-GEDDQYIAYIAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFTAEAIYKSQAETGEVKGHYLNATAGTCEEMMERGQFAKDLGVPIIMHDYITGGFTANTSLAHFCRASGLLLHIHRAMHAVIDRQRNHGIHFRVLAKILRMSGGDHLHSGTVVGKLEGEREITLGFVDLMRDDYIEKDRSRGIYFTQDWVSLPGTMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLASEGGDVIRAACKWSPELAAACEVWKEIKFEFDAIDTLMIRPQTILNVADNSGAKKLMCIRILGGSKQSAKIGDIIIGVIKQATPNMPLKKSDKVRAVIVRTSKEIQRNNGTFIRFDDNAAVIINKDDNPRGTRVFGPVARELREKDFTKIVSLAPEVLMLQPKRTKFRRHHRGKMRGKANRGNKIAYGDYGLQALEPGWIKSRQIESGRRVLTRYVRRHGKLWIRIFPDKPVTMRAAESRMGSGKGTPEYWVSVVKPGKVIFEIRGVTTPVAKKALTIAGHKMPIKTQIIK-MTRVKRGFVARKRRKKVLKITKGFRGSSSILFRSANQRKMKALMFSYRDRRKRKSNLRNLWISRINITSRLYGLNYNQFIYKLKQLNIHINRKWLAQLAVRDQKTFYELIKQVKMIDLIKYPVITEKSFRLIEK-NKYTFDVDKRLTKPQIKKILEGLFKINITSVNTHLPPTKKKRLGLKQGYKVRYKRVIITIKPNQKIPIFMGIRFYKPYTSGTRSRSVSDFNEITKVSPEKSLTFWLFRSKGRNNRGVITSRHRGGGHKRLYRLIDFKRKKVGINGKVKTIEYDPNRKARIALLIHDDGSKSYILHPRGLKINQSVLASPLAPISIGNCLPLKFIPLGTEVHNIELKPGSGGKLARSAGCVAQIVAKENNYVTLRLPSGEVRLLSQNCWATIGQVGNVEANNIRIGKAGAMRWLGKRPKVRGIAMNPCDHAHGGGEGRSPIGRKKPVSLWGKPALGVRTRKKSKYSDKVIIKRRKMKVRASVRKMCDKCRLIRRGRKILVICKNPKHKQRQG-MERLKIKYKEVIIPKLVEQLNLKNIHQVPKISKIVINRGLGEAALNSKILDTSLNEISLVAGQRGVLTRSKKAIAAFKLRAKTAVGISVTLRGDRMYAFLDRFISLALPRIRDFQGINPKSFDGLGNYSLGLEEQLMFPEIDYDKIDQIRGMDISIITTAKTDNDAFTLLKEFGMPFKKMAKQI-KVTSKKIKNKLPKGVVHIQSTFNNTIVTIINLKGKVISWSSAGSCGFKGARKSTPFAAKTAAEIAARQSMDQGLKQAKVMVKGAGPGRETAIRGLIDAGLQITLIRDITGIAHNGCRPPKKRRVMPTIQQLVNSARIKITNKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTTGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTFDTAGVKGRLNSRSKFGVKMAKKSLIARQKKREKLVDKYKIKRQNLKIKIKEEKFLDEKINLYNKLQKLPRNSSATRLNNRCLITGRPQGYYRNFGLSRHILREMAHNCLLPGLSKSSWMKKKYNLKKKKKTIIPITIYK----------SNKSFVQGTIDYKNLQLLRQFISFEGKILPRYLTGLTAKEQRKIANAIKTARVAGLLPFINQ------MSRSLKKGPFVAEHLLKKVQQLNKNNEKKVVETWSRSSTIVPIMIGHTIAVHNGREHIPIFITDQMVGHKLGEFAPTRTFKGHIKKDKKLKRMSRRHRAKKRVISPDPYYDSILVHMLVNRIMKDGKKTLSYKIVYQTMELISEKTEQNSLQILEQAIENVKPLVEVKAQRIGGSAYQVPIEVNS-ERGTVLAIQWILSAARNRAGNSSVLKLTNEILDAFAKTGGAIKRRTEVHRMAEANKAFAK---MINDTISDMLTRIRNANLAKHETVNVLNTKTNQRISEILKKQGYIESVKISL--DLIEIKLKYSGN------LKKPCITNLKRLSSPGLRLYSSYKNIPRILNGMGTIIISTSKGLMTDQEARNNKIGGEVLFSIWIKN-FNKIIATGRRKSSIATVELVPGNGRFIINNQSGINYMQDNAYLIMQMQSPLDELKN---------FDIQITVKGGGLVGQANAIKLGISRALCLFQN-YRPSLKLKGFLTRDARVKERKKYGLKKARKAPQFSKRYTIKAHEISSVIRRQIAQYNEDMRVVNVGTVFQVGDGIARIYGLEKAMAGELLDFEDGTVGIALNLESKNVGAVLMGEGLTVQEGSSVVATGKIAQIPVSDQCLGRVLNSLARPIDGKGDIEATETRLIESPAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTSVALDTIINQKGKDVVCVYVAIGQKAASIAQVVNTLEERGCMDYTIIVAATADSPATLQYLAPYTGASLAEYFMYKGRHTLIIYDDLSKQAQAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQKQLARGQRLREILKQPQSSPLSLEDQVTTIYAGTNGYLDTLPVNEVRSFLVELRQYLSTNKSKYGEIIRETNTLNEEAEALLKEGLTDLL-SNRMAREKFERSKPHVNIGTIGHVDHGKTTLTAAITMALQKFSGKTGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDPELLELVQLEVQETLEAYEFPSEEVPIVTGSALLALEALIENTEV--SDNKWVNKIYDLMKEVDSYIPTPERETDKTFLMAVEDVFSITGRGTVATGRVERGVLKTNETVDLVGLGDTKNVTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDEIQRGMVIAAPNSIEPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIENFT---------ADDGSETKMVIPGDRVKMVVELIQPIAIEDNMRFAIREGGRTVGAGVVSKILEMNFEIILQLTSLVFIVAAGPLVIVLLSTQTDNGMPRSQKNDNFIDKTFTVVADVLIKILPTSNREKQAFTYYRDGMSAQAEGEYAESLQNYYQALRLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAIIYHYRAEQATEKYQSDVAKLLYDKAADYWNEAIRLAPTNYLEAQAWLRQRNLMSSNLIRRYVVVGSRRTSNYIWAIICAIGGIDFLLTGLSSYFNLNLHADNIIFFPQGLVMCFYGLLGIVFSCYLGLTILWSVGGGFNIFDKQNGIVRIFRWGFPGKNRRIDLTYPIDEITAIRLELKDGLNPRRTIYLCVKGQRQIPLTRVGQPMTLEEIEVLAAELAQFLQKDLI--
Dear Xiongqian,
I would guess that you try to analyse an amino acid matrix with a nucleotide model. Indeed the Q is the first symbol that is not in the set of allowed nucleotides and ambiguity codes.
Best Christoph
Am 25.11.2020 um 13:57 schrieb xiongqian123456789 [email protected]:
I am use partifinder2 to cauculate the best partition scheme using amino acid dataset, the err shows Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file, but i cant find the problems in my dateset.
AP018696 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYNAILIQGKNQAGQDISVTCEVQQLLGDHCIRAVAMNATDGLMRGMEAFDTGNPLTVPVGPTTLGRIFNVVGQPVDGLEDASHENSLPIHRSAPAFVDLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIQEDNISESKVALVYGQMNEPPGARMRVALTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYTCAQNVKETLQRYKELQDIIAILGLDELSEEDRQVVARARKIERFLSQPFFVAEVFTGSPGKYVSLKETIQGFNKILSGDLDDLPEQAFYLVGNLEEVVAKAANL-MSLQVCIMTPDKIFWDEEAEEIILPTNTGQMGVLPKHAPLITALDIGVMSIRQDNSWNSFALMNGFASIQNDKVTILVNSAESKQTIDKNEAEKEFLEAQERVNKTIDEKEKVEAVLAFKRSRARFLVIKD----FGHGFGINTNILETNVINLAVVIAVVVTFVGDAVRELLENRKKKILQNICAADARAQEIQEKMDQAISQLESAKIRANEIREQGLIAAEREKNLCIEQAEEETARLKETRQSAIRLQQQKAIQQISQQIVLLSLKQVRDQLKLKMKSTFHPWVNKVKINKYTSIKKMNPLIAAASVIAAGLSVGLAAVGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPFAS-NLLFDSAEVSVGQHYYWEIGSYSIHGQVLMVSWFVFAIIATISFLANNQLKPIPEGLQNLTEFFTEFIRDLAKTQIGEEDYEKWVPFLGTIFLFIFVSNWSGALIPWHVIEIPNGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFKRYISPAAFLLPINVLEDFTKPLSLSFRLFGNILADELVVAVLVALVPLIVPIPIMLLGLFTSGIQALVFATLAGAYIGEAVEDHH---EPVGIIPRSIIRTLNRFLTQLFQNSNNLVIEEFRISRYQILVSLQSLLSLIFIPLIINFLAKTFILIPLTDYLWNKQQDDIFLNSYLEKEALTELQDFEEVLYFDYFLTPTVILKSQIQKKTLDLANNYNQKSIEALTNFFGDLITFGTLTLVIIVLKPQIIIFKSFLVEFIYSLSDTLKSALLILSTNLLVGFHSPRGWELFLEFFLNRFGFPPNENFIFLFVATFPVLLDTIFKYWIFRYLNKISPSTVATYHAMIEMSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASINYLMTEVNFGWLIRSIHRWSASMMVLSMILHVCRVYLTGGFKRPRELTWVTGVTMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGTTLVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMAVIKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVTIFGTFACVIGLAVLDPAAIGEPANPFATPLEILPEWYFYPTFQLLRTVPNKLLGVLLMAAVPAGLITVPFIENINKFQNPFRRPVATTVFLIGTVAAIWLGIGATLPIDISLTLGLFMVEPLLSGIVLGLVPVTISGLLVAAYLQYRRGDSLNFMLTLISYIGLLIGGLIMASIFYLAVVK-IQLIMTISPPEREAKKVKIVVDRDPVETSFEKWAKPGHFSRSLAKGPTTTTWIWNLHADVHDFDAHTSDLEDISRKIFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITTELQLYSTAIGGLVMAAAMFFAGWFHYHKSAPKLEWFQNVESMLNHHLAGLLGLGSLGWAGHQIHVSLPVNKLLDAGVDPQEIPLPHELLLNPSLMAQLYPSFKQGLTPFFTLNWSEYSDFLTFQGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHSGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYATQLSLFTHHNWIGGFCIVGAGAHAAIFMVRDYNPTNNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTLSALGRPADMFSDTAIQLQPIFAQWIQKTHFLAPNATAPNALAGTSPSWGGDVVAVGGKVAMMPISLGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKSNLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGTVNASGISHITGGNFAQSANTINGWLRDFLWAQSAQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIISVGMATTKFPKFSQGLANDPTTRRIWFGIATAHDFESHDGMTEENLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQNPLNIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIATSGVYQWWYTIGMRTNQDLYIGSIFLSLAATAFLFAGWLHLQPKFQPGLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAARGERVGWDNFLTTLPHPQGLTPFFTGNWAAYAENPDTGNHIFGTASGSGTAILTFLGGFHPQTQSLWLSDMAHHHLAIAVLFIVAGHMYRTNFGIGHSMRQILEAHTPPAGGLGAGHKGLYDTVNNSLHFQLGLALASVGTICSLVAQHMYSLPPYAFLAQDFTTQASLYTHHQYIAGFILCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQASHGKTAYGFDLLLSQPNSAAYSAGQSLWLPGWLEAINSNTNTLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYFHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPIAALIRWKDKPVALSIVQARLVGLAHFSAGYVLTYAAFLIASTSSKFGMSHSVKIYETCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGSETTRSMGLSYMKNFLTYLSTAPVIAFAWISFTAGLLIEVNRFFPDPLVFSFMTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGVCAYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSIVDSQGRVLNSWADIINRANLGMEVMHERNAHNFPLDLAMGLPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGVTQSWGGWTITGESASNPGIWSYEGVAASHIVLSGLLFFAAIWHWVMWDLELFRDPRSGKPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGSVQPVAPSWGPDGFDPYNPGGVASHHIAAGILGILAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVAGTMWYGSATTPIELYGPTRYQWDLGFFQQEIDKRVQNSLSEGKSLSQAWAQIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHAVFKDKDGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRAESKYSIEQVGVSVTFYGGELDGVSFTNPATVKKYARRAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGARTIFRDVFAGIDEGIDDQIEFGAFLKLGDTSSRRQSV------------------------------------------------------MNLFEVAHFIPEKPMYEQGLILLPHLATLGYGVGPGGEVVDTFPYFVSGVLHLISSAVLGFGGIYHSLIGPETLEESFPFFAYVWKDKNKMSTILGIHLIILGIGAWLLVWKAMYFGGVYDTWAVGGGDVRVITNPTINPGIIFGYLLKSPFGGDGWIVSVDNMEDIIGGHIWIGTLEIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLAAISLMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFVLGFFFFVAHLWHAGRARAAAAGFEKGIDRDNEPALSMKPLDMTITIGKSEEKRGLFDVMDDWLRRDRFVYVGWSGLLLLPCAYFALGGWLTGITFVTSWYSHGLASSFLEGCNFLTAAVSTPPNSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARAVKIRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNQLLNEGIRAWMAAQDQPHETLVFPEEVLPRGNALMAGTTGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNSLEQVKQLSTMSSKKS-TYTYPIFTVRWLSVHALAVPTVFFLGAITAMQFIQR---AAQKDTEN---GMSTALGTLLRPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVILDDVTMSWQTLAKMLTLKIFVYTVVSFFVSLFIFGFLSNDPGRNPSS---MSNTGTTGRIPLWLVGVVVGIAAIGLLAIFFYGSYSGLGSSL---MTFLLAKLPEAYAPFDPIVDVLPIIPVFFLLLAFVWQASVSFRMNKPNPNKQTVELNRTSLYWGLLLIFVLAVLFSSYIFNMEVNVLGLIAVALFILIPTSFLLILYVKTASADEMESPAFFFSIFIGCLLLSITGYSLYVGFGPPSKTLRDPFEEHEDMEALVYTFLLVGTLGIIFFSIFFREPPRIIKMTFIFQLTLFAFVSLSFILVVGVPVIFASPNGWTENKRVVFSGVGIWVLLVFALGVLNSFVIMAPQTETKAGTGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPL-GEDDQYIAYIAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFTAEAIYKSQAETGEVKGHYLNATAGTCEEMMERGQFAKDLGVPIIMHDYITGGFTANTSLAHFCRASGLLLHIHRAMHAVIDRQRNHGIHFRVLAKILRMSGGDHLHSGTVVGKLEGEREITLGFVDLMRDDYIEKDRSRGIYFTQDWVSLPGTMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLASEGGDVIRAACKWSPELAAACEVWKEIKFEFDAIDTLMIRPQTILNVADNSGAKKLMCIRILGGSKQSAKIGDIIIGVIKQATPNMPLKKSDKVRAVIVRTSKEIQRNNGTFIRFDDNAAVIINKDDNPRGTRVFGPVARELREKDFTKIVSLAPEVLMLQPKRTKFRRHHRGKMRGKANRGNKIAYGDYGLQALEPGWIKSRQIESGRRVLTRYVRRHGKLWIRIFPDKPVTMRAAESRMGSGKGTPEYWVSVVKPGKVIFEIRGVTTPVAKKALTIAGHKMPIKTQIIK-MTRVKRGFVARKRRKKVLKITKGFRGSSSILFRSANQRKMKALMFSYRDRRKRKSNLRNLWISRINITSRLYGLNYNQFIYKLKQLNIHINRKWLAQLAVRDQKTFYELIKQVKMIDLIKYPVITEKSFRLIEK-NKYTFDVDKRLTKPQIKKILEGLFKINITSVNTHLPPTKKKRLGLKQGYKVRYKRVIITIKPNQKIPIFMGIRFYKPYTSGTRSRSVSDFNEITKVSPEKSLTFWLFRSKGRNNRGVITSRHRGGGHKRLYRLIDFKRKKVGINGKVKTIEYDPNRKARIALLIHDDGSKSYILHPRGLKINQSVLASPLAPISIGNCLPLKFIPLGTEVHNIELKPGSGGKLARSAGCVAQIVAKENNYVTLRLPSGEVRLLSQNCWATIGQVGNVEANNIRIGKAGAMRWLGKRPKVRGIAMNPCDHAHGGGEGRSPIGRKKPVSLWGKPALGVRTRKKSKYSDKVIIKRRKMKVRASVRKMCDKCRLIRRGRKILVICKNPKHKQRQG-MERLKIKYKEVIIPKLVEQLNLKNIHQVPKISKIVINRGLGEAALNSKILDTSLNEISLVAGQRGVLTRSKKAIAAFKLRAKTAVGISVTLRGDRMYAFLDRFISLALPRIRDFQGINPKSFDGLGNYSLGLEEQLMFPEIDYDKIDQIRGMDISIITTAKTDNDAFTLLKEFGMPFKKMAKQI-KVTSKKIKNKLPKGVVHIQSTFNNTIVTIINLKGKVISWSSAGSCGFKGARKSTPFAAKTAAEIAARQSMDQGLKQAKVMVKGAGPGRETAIRGLIDAGLQITLIRDITGIAHNGCRPPKKRRVMPTIQQLVNSARIKITNKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTTGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTFDTAGVKGRLNSRSKFGVKMAKKSLIARQKKREKLVDKYKIKRQNLKIKIKEEKFLDEKINLYNKLQKLPRNSSATRLNNRCLITGRPQGYYRNFGLSRHILREMAHNCLLPGLSKSSWMKKKYNLKKKKKTIIPITIYK----------SNKSFVQGTIDYKNLQLLRQFISFEGKILPRYLTGLTAKEQRKIANAIKTARVAGLLPFINQ------MSRSLKKGPFVAEHLLKKVQQLNKNNEKKVVETWSRSSTIVPIMIGHTIAVHNGREHIPIFITDQMVGHKLGEFAPTRTFKGHIKKDKKLKRMSRRHRAKKRVISPDPYYDSILVHMLVNRIMKDGKKTLSYKIVYQTMELISEKTEQNSLQILEQAIENVKPLVEVKAQRIGGSAYQVPIEVNS-ERGTVLAIQWILSAARNRAGNSSVLKLTNEILDAFAKTGGAIKRRTEVHRMAEANKAFAK---MINDTISDMLTRIRNANLAKHETVNVLNTKTNQRISEILKKQGYIESVKISL--DLIEIKLKYSGN------LKKPCITNLKRLSSPGLRLYSSYKNIPRILNGMGTIIISTSKGLMTDQEARNNKIGGEVLFSIWIKN-FNKIIATGRRKSSIATVELVPGNGRFIINNQSGINYMQDNAYLIMQMQSPLDELKN---------FDIQITVKGGGLVGQANAIKLGISRALCLFQN-YRPSLKLKGFLTRDARVKERKKYGLKKARKAPQFSKRYTIKAHEISSVIRRQIAQYNEDMRVVNVGTVFQVGDGIARIYGLEKAMAGELLDFEDGTVGIALNLESKNVGAVLMGEGLTVQEGSSVVATGKIAQIPVSDQCLGRVLNSLARPIDGKGDIEATETRLIESPAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTSVALDTIINQKGKDVVCVYVAIGQKAASIAQVVNTLEERGCMDYTIIVAATADSPATLQYLAPYTGASLAEYFMYKGRHTLIIYDDLSKQAQAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQKQLARGQRLREILKQPQSSPLSLEDQVTTIYAGTNGYLDTLPVNEVRSFLVELRQYLSTNKSKYGEIIRETNTLNEEAEALLKEGLTDLL-SNRMAREKFERSKPHVNIGTIGHVDHGKTTLTAAITMALQKFSGKTGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDPELLELVQLEVQETLEAYEFPSEEVPIVTGSALLALEALIENTEV--SDNKWVNKIYDLMKEVDSYIPTPERETDKTFLMAVEDVFSITGRGTVATGRVERGVLKTNETVDLVGLGDTKNVTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDEIQRGMVIAAPNSIEPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIENFT---------ADDGSETKMVIPGDRVKMVVELIQPIAIEDNMRFAIREGGRTVGAGVVSKILEMNFEIILQLTSLVFIVAAGPLVIVLLSTQTDNGMPRSQKNDNFIDKTFTVVADVLIKILPTSNREKQAFTYYRDGMSAQAEGEYAESLQNYYQALRLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAIIYHYRAEQATEKYQSDVAKLLYDKAADYWNEAIRLAPTNYLEAQAWLRQRNLMSSNLIRRYVVVGSRRTSNYIWAIICAIGGIDFLLTGLSSYFNLNLHADNIIFFPQGLVMCFYGLLGIVFSCYLGLTILWSVGGGFNIFDKQNGIVRIFRWGFPGKNRRIDLTYPIDEITAIRLELKDGLNPRRTIYLCVKGQRQIPLTRVGQPMTLEEIEVLAAELAQFLQKDLI--
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Dr. Christoph Mayer Email: [email protected] Tel.: +49 (0)228 9122 403
Zoologisches Forschungsmuseum Alexander Koenig
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Thank you very much for your responding. And I have checked the manual and found the error.
At 2020-11-25 21:20:23, "Christoph Mayer" [email protected] wrote:
Dear Xiongqian,
I would guess that you try to analyse an amino acid matrix with a nucleotide model. Indeed the Q is the first symbol that is not in the set of allowed nucleotides and ambiguity codes.
Best Christoph
Am 25.11.2020 um 13:57 schrieb xiongqian123456789 [email protected]:
I am use partifinder2 to cauculate the best partition scheme using amino acid dataset, the err shows Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file, but i cant find the problems in my dateset.
AP018696 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYNAILIQGKNQAGQDISVTCEVQQLLGDHCIRAVAMNATDGLMRGMEAFDTGNPLTVPVGPTTLGRIFNVVGQPVDGLEDASHENSLPIHRSAPAFVDLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIQEDNISESKVALVYGQMNEPPGARMRVALTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYTCAQNVKETLQRYKELQDIIAILGLDELSEEDRQVVARARKIERFLSQPFFVAEVFTGSPGKYVSLKETIQGFNKILSGDLDDLPEQAFYLVGNLEEVVAKAANL-MSLQVCIMTPDKIFWDEEAEEIILPTNTGQMGVLPKHAPLITALDIGVMSIRQDNSWNSFALMNGFASIQNDKVTILVNSAESKQTIDKNEAEKEFLEAQERVNKTIDEKEKVEAVLAFKRSRARFLVIKD----FGHGFGINTNILETNVINLAVVIAVVVTFVGDAVRELLENRKKKILQNICAADARAQEIQEKMDQAISQLESAKIRANEIREQGLIAAEREKNLCIEQAEEETARLKETRQSAIRLQQQKAIQQISQQIVLLSLKQVRDQLKLKMKSTFHPWVNKVKINKYTSIKKMNPLIAAASVIAAGLSVGLAAVGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPFAS-NLLFDSAEVSVGQHYYWEIGSYSIHGQVLMVSWFVFAIIATISFLANNQLKPIPEGLQNLTEFFTEFIRDLAKTQIGEEDYEKWVPFLGTIFLFIFVSNWSGALIPWHVIEIPNGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFKRYISPAAFLLPINVLEDFTKPLSLSFRLFGNILADELVVAVLVALVPLIVPIPIMLLGLFTSGIQALVFATLAGAYIGEAVEDHH---EPVGIIPRSIIRTLNRFLTQLFQNSNNLVIEEFRISRYQILVSLQSLLSLIFIPLIINFLAKTFILIPLTDYLWNKQQDDIFLNSYLEKEALTELQDFEEVLYFDYFLTPTVILKSQIQKKTLDLANNYNQKSIEALTNFFGDLITFGTLTLVIIVLKPQIIIFKSFLVEFIYSLSDTLKSALLILSTNLLVGFHSPRGWELFLEFFLNRFGFPPNENFIFLFVATFPVLLDTIFKYWIFRYLNKISPSTVATYHAMIEMSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASINYLMTEVNFGWLIRSIHRWSASMMVLSMILHVCRVYLTGGFKRPRELTWVTGVTMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGTTLVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMAVIKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVTIFGTFACVIGLAVLDPAAIGEPANPFATPLEILPEWYFYPTFQLLRTVPNKLLGVLLMAAVPAGLITVPFIENINKFQNPFRRPVATTVFLIGTVAAIWLGIGATLPIDISLTLGLFMVEPLLSGIVLGLVPVTISGLLVAAYLQYRRGDSLNFMLTLISYIGLLIGGLIMASIFYLAVVK-IQLIMTISPPEREAKKVKIVVDRDPVETSFEKWAKPGHFSRSLAKGPTTTTWIWNLHADVHDFDAHTSDLEDISRKIFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITTELQLYSTAIGGLVMAAAMFFAGWFHYHKSAPKLEWFQNVESMLNHHLAGLLGLGSLGWAGHQIHVSLPVNKLLDAGVDPQEIPLPHELLLNPSLMAQLYPSFKQGLTPFFTLNWSEYSDFLTFQGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHSGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYATQLSLFTHHNWIGGFCIVGAGAHAAIFMVRDYNPTNNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTLSALGRPADMFSDTAIQLQPIFAQWIQKTHFLAPNATAPNALAGTSPSWGGDVVAVGGKVAMMPISLGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKSNLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGTVNASGISHITGGNFAQSANTINGWLRDFLWAQSAQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIISVGMATTKFPKFSQGLANDPTTRRIWFGIATAHDFESHDGMTEENLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQNPLNIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIATSGVYQWWYTIGMRTNQDLYIGSIFLSLAATAFLFAGWLHLQPKFQPGLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAARGERVGWDNFLTTLPHPQGLTPFFTGNWAAYAENPDTGNHIFGTASGSGTAILTFLGGFHPQTQSLWLSDMAHHHLAIAVLFIVAGHMYRTNFGIGHSMRQILEAHTPPAGGLGAGHKGLYDTVNNSLHFQLGLALASVGTICSLVAQHMYSLPPYAFLAQDFTTQASLYTHHQYIAGFILCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQASHGKTAYGFDLLLSQPNSAAYSAGQSLWLPGWLEAINSNTNTLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYFHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPIAALIRWKDKPVALSIVQARLVGLAHFSAGYVLTYAAFLIASTSSKFGMSHSVKIYETCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGSETTRSMGLSYMKNFLTYLSTAPVIAFAWISFTAGLLIEVNRFFPDPLVFSFMTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGVCAYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSIVDSQGRVLNSWADIINRANLGMEVMHERNAHNFPLDLAMGLPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGVTQSWGGWTITGESASNPGIWSYEGVAASHIVLSGLLFFAAIWHWVMWDLELFRDPRSGKPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGSVQPVAPSWGPDGFDPYNPGGVASHHIAAGILGILAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVAGTMWYGSATTPIELYGPTRYQWDLGFFQQEIDKRVQNSLSEGKSLSQAWAQIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHAVFKDKDGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRAESKYSIEQVGVSVTFYGGELDGVSFTNPATVKKYARRAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGARTIFRDVFAGIDEGIDDQIEFGAFLKLGDTSSRRQSV------------------------------------------------------MNLFEVAHFIPEKPMYEQGLILLPHLATLGYGVGPGGEVVDTFPYFVSGVLHLISSAVLGFGGIYHSLIGPETLEESFPFFAYVWKDKNKMSTILGIHLIILGIGAWLLVWKAMYFGGVYDTWAVGGGDVRVITNPTINPGIIFGYLLKSPFGGDGWIVSVDNMEDIIGGHIWIGTLEIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLAAISLMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFVLGFFFFVAHLWHAGRARAAAAGFEKGIDRDNEPALSMKPLDMTITIGKSEEKRGLFDVMDDWLRRDRFVYVGWSGLLLLPCAYFALGGWLTGITFVTSWYSHGLASSFLEGCNFLTAAVSTPPNSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARAVKIRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNQLLNEGIRAWMAAQDQPHETLVFPEEVLPRGNALMAGTTGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNSLEQVKQLSTMSSKKS-TYTYPIFTVRWLSVHALAVPTVFFLGAITAMQFIQR---AAQKDTEN---GMSTALGTLLRPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVILDDVTMSWQTLAKMLTLKIFVYTVVSFFVSLFIFGFLSNDPGRNPSS---MSNTGTTGRIPLWLVGVVVGIAAIGLLAIFFYGSYSGLGSSL---MTFLLAKLPEAYAPFDPIVDVLPIIPVFFLLLAFVWQASVSFRMNKPNPNKQTVELNRTSLYWGLLLIFVLAVLFSSYIFNMEVNVLGLIAVALFILIPTSFLLILYVKTASADEMESPAFFFSIFIGCLLLSITGYSLYVGFGPPSKTLRDPFEEHEDMEALVYTFLLVGTLGIIFFSIFFREPPRIIKMTFIFQLTLFAFVSLSFILVVGVPVIFASPNGWTENKRVVFSGVGIWVLLVFALGVLNSFVIMAPQTETKAGTGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPL-GEDDQYIAYIAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFTAEAIYKSQAETGEVKGHYLNATAGTCEEMMERGQFAKDLGVPIIMHDYITGGFTANTSLAHFCRASGLLLHIHRAMHAVIDRQRNHGIHFRVLAKILRMSGGDHLHSGTVVGKLEGEREITLGFVDLMRDDYIEKDRSRGIYFTQDWVSLPGTMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLASEGGDVIRAACKWSPELAAACEVWKEIKFEFDAIDTLMIRPQTILNVADNSGAKKLMCIRILGGSKQSAKIGDIIIGVIKQATPNMPLKKSDKVRAVIVRTSKEIQRNNGTFIRFDDNAAVIINKDDNPRGTRVFGPVARELREKDFTKIVSLAPEVLMLQPKRTKFRRHHRGKMRGKANRGNKIAYGDYGLQALEPGWIKSRQIESGRRVLTRYVRRHGKLWIRIFPDKPVTMRAAESRMGSGKGTPEYWVSVVKPGKVIFEIRGVTTPVAKKALTIAGHKMPIKTQIIK-MTRVKRGFVARKRRKKVLKITKGFRGSSSILFRSANQRKMKALMFSYRDRRKRKSNLRNLWISRINITSRLYGLNYNQFIYKLKQLNIHINRKWLAQLAVRDQKTFYELIKQVKMIDLIKYPVITEKSFRLIEK-NKYTFDVDKRLTKPQIKKILEGLFKINITSVNTHLPPTKKKRLGLKQGYKVRYKRVIITIKPNQKIPIFMGIRFYKPYTSGTRSRSVSDFNEITKVSPEKSLTFWLFRSKGRNNRGVITSRHRGGGHKRLYRLIDFKRKKVGINGKVKTIEYDPNRKARIALLIHDDGSKSYILHPRGLKINQSVLASPLAPISIGNCLPLKFIPLGTEVHNIELKPGSGGKLARSAGCVAQIVAKENNYVTLRLPSGEVRLLSQNCWATIGQVGNVEANNIRIGKAGAMRWLGKRPKVRGIAMNPCDHAHGGGEGRSPIGRKKPVSLWGKPALGVRTRKKSKYSDKVIIKRRKMKVRASVRKMCDKCRLIRRGRKILVICKNPKHKQRQG-MERLKIKYKEVIIPKLVEQLNLKNIHQVPKISKIVINRGLGEAALNSKILDTSLNEISLVAGQRGVLTRSKKAIAAFKLRAKTAVGISVTLRGDRMYAFLDRFISLALPRIRDFQGINPKSFDGLGNYSLGLEEQLMFPEIDYDKIDQIRGMDISIITTAKTDNDAFTLLKEFGMPFKKMAKQI-KVTSKKIKNKLPKGVVHIQSTFNNTIVTIINLKGKVISWSSAGSCGFKGARKSTPFAAKTAAEIAARQSMDQGLKQAKVMVKGAGPGRETAIRGLIDAGLQITLIRDITGIAHNGCRPPKKRRVMPTIQQLVNSARIKITNKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTTGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTFDTAGVKGRLNSRSKFGVKMAKKSLIARQKKREKLVDKYKIKRQNLKIKIKEEKFLDEKINLYNKLQKLPRNSSATRLNNRCLITGRPQGYYRNFGLSRHILREMAHNCLLPGLSKSSWMKKKYNLKKKKKTIIPITIYK----------SNKSFVQGTIDYKNLQLLRQFISFEGKILPRYLTGLTAKEQRKIANAIKTARVAGLLPFINQ------MSRSLKKGPFVAEHLLKKVQQLNKNNEKKVVETWSRSSTIVPIMIGHTIAVHNGREHIPIFITDQMVGHKLGEFAPTRTFKGHIKKDKKLKRMSRRHRAKKRVISPDPYYDSILVHMLVNRIMKDGKKTLSYKIVYQTMELISEKTEQNSLQILEQAIENVKPLVEVKAQRIGGSAYQVPIEVNS-ERGTVLAIQWILSAARNRAGNSSVLKLTNEILDAFAKTGGAIKRRTEVHRMAEANKAFAK---MINDTISDMLTRIRNANLAKHETVNVLNTKTNQRISEILKKQGYIESVKISL--DLIEIKLKYSGN------LKKPCITNLKRLSSPGLRLYSSYKNIPRILNGMGTIIISTSKGLMTDQEARNNKIGGEVLFSIWIKN-FNKIIATGRRKSSIATVELVPGNGRFIINNQSGINYMQDNAYLIMQMQSPLDELKN---------FDIQITVKGGGLVGQANAIKLGISRALCLFQN-YRPSLKLKGFLTRDARVKERKKYGLKKARKAPQFSKRYTIKAHEISSVIRRQIAQYNEDMRVVNVGTVFQVGDGIARIYGLEKAMAGELLDFEDGTVGIALNLESKNVGAVLMGEGLTVQEGSSVVATGKIAQIPVSDQCLGRVLNSLARPIDGKGDIEATETRLIESPAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTSVALDTIINQKGKDVVCVYVAIGQKAASIAQVVNTLEERGCMDYTIIVAATADSPATLQYLAPYTGASLAEYFMYKGRHTLIIYDDLSKQAQAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQKQLARGQRLREILKQPQSSPLSLEDQVTTIYAGTNGYLDTLPVNEVRSFLVELRQYLSTNKSKYGEIIRETNTLNEEAEALLKEGLTDLL-SNRMAREKFERSKPHVNIGTIGHVDHGKTTLTAAITMALQKFSGKTGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDPELLELVQLEVQETLEAYEFPSEEVPIVTGSALLALEALIENTEV--SDNKWVNKIYDLMKEVDSYIPTPERETDKTFLMAVEDVFSITGRGTVATGRVERGVLKTNETVDLVGLGDTKNVTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDEIQRGMVIAAPNSIEPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIENFT---------ADDGSETKMVIPGDRVKMVVELIQPIAIEDNMRFAIREGGRTVGAGVVSKILEMNFEIILQLTSLVFIVAAGPLVIVLLSTQTDNGMPRSQKNDNFIDKTFTVVADVLIKILPTSNREKQAFTYYRDGMSAQAEGEYAESLQNYYQALRLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAIIYHYRAEQATEKYQSDVAKLLYDKAADYWNEAIRLAPTNYLEAQAWLRQRNLMSSNLIRRYVVVGSRRTSNYIWAIICAIGGIDFLLTGLSSYFNLNLHADNIIFFPQGLVMCFYGLLGIVFSCYLGLTILWSVGGGFNIFDKQNGIVRIFRWGFPGKNRRIDLTYPIDEITAIRLELKDGLNPRRTIYLCVKGQRQIPLTRVGQPMTLEEIEVLAAELAQFLQKDLI--
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Dr. Christoph Mayer Email: [email protected] Tel.: +49 (0)228 9122 403
Zoologisches Forschungsmuseum Alexander Koenig
- Leibniz Institut für Biodiversität der Tiere - Adenauerallee 160 53113 Bonn, Germany www.zfmk.de
Stiftung des öffentlichen Rechts; Interimsdirektor: Prof. B. Misof Sitz: Bonn
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