Brendon Watson

Hey @nsteinme any nice ways you guys have to run such a filter? Maybe a plugin?

Ah i see. That's a good point. So you create a second binary file that's averaged across channels and then run kilosort on that? (also, have you ever tried median...

Thanks! By the way it looks like that does 2D median filtering actually! "% Subtracts median of each channel, then subtracts median of each time % point." (and all calls...

I had an idea in relation to the big spikes problem. Basically this is due to a desire to catch burst spikes, right? But of course burst spikes are smaller...

What is the script for cleaning noise spikes ahead of time? Something you'd want to share? I think kilosort is great but is a bit lightly supported considering Marius et...

Totally understood of course... thanks!

The only think I know of that would minimiize almost-simultaneous spikes is to reduce the temporal duration of the template... but that would only handle double spikes more distant in...

I think if you look here it's the right format - under Data Files http://neuroscope.sourceforge.net/UserManual/data-files.html On Sun, May 26, 2019 at 1:30 PM tchemaly wrote: > My .bin file is...

Great questions. I’m interested in this too. On Wed, Aug 29, 2018 at 6:51 AM PhantomSpike wrote: > Hi, > > Is it possible to somehow control the merging sensitivity...

Yes you can still use Phy to refine your spikes. Phy is just for human interaction and the spatial arrangement capacities are just to make you as a human better...