Benjamin Redelings

Also, a comparison with Thyer's thesis on "Lazy Specialization" would be helpful. It seems like he suggests that optimal evaluation has too much overhead, and that optimal evaluation requires not...

I was just about to submit the same request! I'm not using the `--trusted-contigs option`, but I have found that spades can produce highly accurate contigs, except in regions with...

A number of people seem to have reported new warnings from GCC 12 for `-Warray-bounds`. Here's an example: https://bugzilla.redhat.com/show_bug.cgi?id=2047439 "This instance of -Warray-bounds usually triggers when accessing an object of...

Actually meson does the right thing when I coded the `meson.build` file in a better way. However, the first issue about using the right flags to link against libcurl and...

Hi, are covarion / markov-modulated substitution models still missing from IQ Tree? These are present in BAli-Phy and RevBayes, and I know that Nicolas Lartillot has also implemented them. If...

BTW, I'm currently investigating these models, and data sets where the rate category for a site is different in different subtrees are not hard to find. All the literature suggests...

I'm not sure if I care if its enabled by default, but could we at least add an optional flag to read/write NaN, Infinity, and -Infinity?

Note that Boost.JSON has decided to write Inf and -Inf as 1e99999 and -1e99999, which seems to handle Inf without violating the JSON spec. https://github.com/boostorg/json/issues/397 They still write NaN as...

Hi Joel, Is this still an issue with the git master branch? -BenRI

Hi Andreas, Thanks! I am traveling overseas right now and my internet access is limited, so I might not be able to fully investigate this until I get back on...