Basile

fixes #2321 on python3.8 opening PR to check if it causes issues with testing on more platforms/python versions.

fix crash when trying to record before calibration when no past calibration data exists If I understand correctly what that portion of code is doing, it should ignore when no...

ENH: insert the gradunwarp workflow in anat template workflow

14

Working on https://github.com/nipreps/fmriprep/issues/1550. Relies on an updated version of the gradunwarp https://github.com/bpinsard/gradunwarp/tree/fix/mem_leaks. Unwarping is inserted in the `anat_template_wf` and is thus applied to T1w and T2w. It is applied after...

B0FieldIdentifier: some characters should be replaced to set workflow name to avoid crashes in graph creation

4

FMRIPrep version 20.1.0 Not sure if that is in fMRIPrep or SDCFlows that the workflow name is set, but I get the following error if B0FieldIdentifier contains a `-` ,...

IntendedFor is ignored by wrangler.find_estimators

9

I am trying the new fMRIPrep release 21.0.1, and I have never ending topup on pilot multi-echo data. Trying to investigate why, I found out that SDCFlow ignored the `IntendedFor`...

Write functions to output displacement fields from nitransforms to nifti for ITK/FSL/AFNI. see https://github.com/nipreps/niworkflows/pull/819#discussion_r1287485844

ENH: add gradunwarp base workflow for f/smriprep.

3

Working on https://github.com/nipreps/fmriprep/issues/1550. Relies on an updated version of the gradunwarp https://github.com/bpinsard/gradunwarp/tree/fix/mem_leaks.

niak clogs /tmp and kills the OS

4

niak puts a lot of stuff in `/tmp` and never clear it up... From looking into the code, the place for tmp is set by `TMPDIR` env variable. This should...

pass refine_pial args for autorecon resume

1

T2/FLAIR can be input on resumed recon-all, so we want that option. Usecase: - run autorecon1: this without passing T2/FLAIR (otherwise autorecon1 crashes trying to load surfaces not yet produced)...