Basile

annexrepo.fsck can fail silently on non-existing remote

2

### What is the problem? calling `Dataset.repo.fsck` with a non-existing remote will return an empty list (as if no files were fsck-ed). `RemoteNotAvailableError` kwargs is empty thus do no contains...

BF: failure to install recursively from a relative path

2

Working on a fix for #7478 that looks like a more generic case of #2232 . - [x] writing a test that reproduces the bug - [ ] write a...

ENH: add --cfg-proc to install, clone, and get

14

Adds the `--cfg-proc` option to install command to allow running commands on dataset post-installation. see #7468 It runs procedure after recursive install. It does not call the procedure recursively for...

add --want-get to get command .... and more preferred-content thinking

7

### What is the problem? It would be great to allow passing the `--want-get` option to git-annex. More generally, I am looking into mechanisms that would allow a dataset creator...

Add a `--fs-reuse-base` option to reuse existing freesurfer outputs from a longitudinal pipeline

1

## Changes proposed in this pull request (reopen of #3105) Integrate options/configs for https://github.com/nipreps/smriprep/pull/393 ## Documentation that should be reviewed

t2smap OOM

4

### What happened? Processing session with 6 runs of multi-echo, the jobs get killed by SLURM, despite setting memory reqs of SLURM with a larger buffer to memory given to...

ENH: insert gradunwarp in bold workflow

1

## Changes proposed in this pull request The goal of that PR is to integrate gradient unwarping to the BOLD preprocessing workflows (and to anat workflows through update of smriprep)....

SDC report svg on SBRef pepolar scheme alternates between SBRef and BOLD.

4

### What happened? Running fMRIPrep with Pepolar SDC based on SBRefs with multi-echo data. The figure in the reports seems to alternate between different contrasts or echoes, maybe one is...

Input deface mask for unbiased results.

2

### What would you like to see added in this software? I cannot find anywhere in the docs/code/issues mention of input of deface mask, from command line or BIDS. For...

Gazer2D calibration data(errorlines/convex hull) no longer displayed.

5

In past versions, there was a bunch of orange lines in the world window + convex hull that were displayed when completing a calibration. It's no longer the case in...