Basile

@mattcieslak thanks for this information. When you say displacement field from coeffs files you mean as a replacement to gradunwarp? Do you have a link to the documentation of the...

ok, rebase was way too difficult after fit/apply refactor, restarted from scratch. There are added changes to pass BIDSLayout to get per-contrast/per-file metadata indicative of scanner distortion correction. If all...

Giving it more thought, I think the step should be inserted after denoising but before conform to keep the affine intact.

the failing CI will require niworkflows PR to be merged.

@Beatrizfg20 yes, I recently added this feature here https://github.com/nipreps/fmriprep/pull/3142 / https://github.com/nipreps/smriprep/pull/393 to just do that. I applied this on our dataset, though I used smriprep first steps on the raw...

Replaced offending characters in my B0Field* tags and it works now, if that can help anyone encountering that issue.

Looking at the wrangler code, I can see that some options that were working in the previous version might no longer possible. For instance, running fmriprep on a dataset including...

Any potential fix for that issue? I am also puzzle by the pybids query to find the fmaps tagged with B0FieldIdentifier here https://github.com/nipreps/sdcflows/blob/83b064ee81760b03db3c4384510bafde78c79c06/sdcflows/utils/wrangler.py#L295-L299 as I cannot get any results with...

I think I solved a part of the puzzle about pybids not finding the B0FieldIdentifier tagged files. If `B0FieldIdentifier` is a list in the json (which is allowed in the...

You mean it should work with list, getting a match if any value in the list matches?