Basile
Basile
Hi! Any chance this PR can move forward. We have a usecase that would highly benefit from that feature! Thanks! (It seems the mac and lint tests are broken in...
Inconsistent failure of the `datalad/distribution/tests/test_install.py::test_invalid_args` depending on python version, or env or else https://github.com/datalad/datalad/blob/d4ce9ce377bde2d59fc3a550938b51931dbfbb7b/datalad/distribution/tests/test_install.py#L143 In my local env (platform linux -- Python 3.10.12, pytest-8.1.1) it raises IncompleteResultsError rather than TypeError....
I realized that I get that warning in the logs ``` 231103-02:09:47,698 nipype.workflow WARNING: Some nodes exceed the total amount of memory available (45.00GB). ``` I cannot imagine which operation...
In fact it is not limited to multi-echo, happens for single-echo, it is more specific to using the SBRef (which I hacked using the temporary patch https://github.com/nipreps/fmriprep/issues/2889 ). I can...
Changed the title as it is not multi-echo specific, but it still shows more prominently with multi-echo as it seems that it is mingled with echoes or combined differences.
`concat_blips` references both SBRefs so that's correct on the SDC estimation part.
HI Céline, I have seen such warning raised in mriqc recently, which triggered this more general question as I foresee it to be an issue in our automated pipelines with...
I am not sure why both files are present in templateflow/tpl-fsaverage. Is that because of CI cache/precomputed inputs ? ``` FileNotFoundError: [Errno 2] No such file or directory: "[PosixPath('/home/smriprep/.cache/templateflow/tpl-fsaverage/tpl-fsaverage_dseg.tsv'), PosixPath('/home/smriprep/.cache/templateflow/tpl-fsaverage/tpl-fsaverage_seg-aparc_dseg.tsv')]"...
Right I wrongly assumed these were compatible. Regarding the transforms, I think it would be possible to make gradunwarp output in a nitransforms compatible format maybe skipping/simplifying that step.
I upgraded the workflow in niworkflow to convert the warp from fsl to itk, based on the code of nitransforms. As nitransforms.io only inputs transforms, I inverted the itk input...